Browse Element(s) Details


OsAffx.22124.3.S1_s_at

Description tigr:9629.m01052
TID=OsAffx.22124.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Integral membrane protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1097011/11Integral membrane protein DUF6 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10910Os.43764.1.A1_at5/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.7.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.2.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.3.S1_x_at1/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10920OsAffx.11852.2.S1_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10920OsAffx.11852.1.S1_x_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10920OsAffx.11852.1.S1_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10930Os.32657.1.S1_at11/111+5825355..5827630Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os01g10940NANA1+5830415..5830909S-adenosylmethionine synthetase 1, putative
LOC_Os01g10950Os.14564.1.S1_at11/111+5834398..5836700Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os01g10960Os.34020.2.S1_at4/111+5838538..5840376Peptide-N4-asparagine amidase A, putative
LOC_Os01g10970OsAffx.22124.3.S1_s_at11/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10970OsAffx.22124.2.S1_x_at11/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10970OsAffx.22124.1.S1_x_at1/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10980OsAffx.22124.1.S1_at11/111+5853269..5854722Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10980OsAffx.22124.1.S1_x_at11/111+5853269..5854722Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10980OsAffx.22124.2.S1_x_at1/111+5853269..5854722Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10990Os.30989.1.S1_at11/111+5858695..5860379Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10990Os.7779.1.S1_x_at1/111+5858695..5860379Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g11000OsAffx.1284.1.S1_at11/111+5862191..5866284transposon protein, putative, unclassified
LOC_Os01g11000Os.54966.1.S1_at2/111+5862191..5866284transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22124.3.S1_s_at--887--7791Chr01:5845209..5845233 (25 bp)
GGTCGCTCTGGATCGTGCTCATGTC
LOC_Os01g10970
OsAffx.22124.3.S1_s_at--602--4811Chr01:5845213..5845237 (25 bp)
GCTCTGGATCGTGCTCATGTCGCCG
LOC_Os01g10970
OsAffx.22124.3.S1_s_at--607--9091Chr01:5845239..5845263 (25 bp)
TGCTCAACGAGTACCCCTGCAAGAT
LOC_Os01g10970
OsAffx.22124.3.S1_s_at--531--2591Chr01:5845244..5845268 (25 bp)
AACGAGTACCCCTGCAAGATGCTGG
LOC_Os01g10970
OsAffx.22124.3.S1_s_at--551--4071Chr01:5845246..5845270 (25 bp)
CGAGTACCCCTGCAAGATGCTGGCC
LOC_Os01g10970
OsAffx.22124.3.S1_s_at--527--9051Chr01:5845278..5845302 (25 bp)
TGCAGTCCCTGCTCAGCGCGGCGCA
LOC_Os01g10970
OsAffx.22124.3.S1_s_at--584--9271Chr01:5845560..5845584 (25 bp)
TCCTGATGGTGGCCGGCCTCTACAG
LOC_Os01g10970
OsAffx.22124.3.S1_s_at--1044--9031Chr01:5845657..5845681 (25 bp)
TGCACCACCCGCTGCAGAGAGCAGC
LOC_Os01g10970
OsAffx.22124.3.S1_s_at--944--5051Chr01:5845680..5845704 (25 bp)
GCAGCAGCAGTGACAATGAGAGCAA
LOC_Os01g10970
OsAffx.22124.3.S1_s_at--806--5051Chr01:5845683..5845707 (25 bp)
GCAGCAGTGACAATGAGAGCAAACA
LOC_Os01g10970
OsAffx.22124.3.S1_s_at--937--8951Chr01:5845690..5845714 (25 bp)
TGACAATGAGAGCAAACACCAGCAG
LOC_Os01g10970
Target Sequence 
GGTCGCTCTGGATCGTGCTCATGTCGCCGCTGCTCAACGAGTACCCCTGCAAGATGCTGGCCACGGCGCTGCAGTCCCTG
CTCAGCGCGGCGCAGTCGCTGGTGCTCGCGGCGGCGGCGGCGGCGCGGAACCCGGCGGCGCGGAGGCTGCGGCTCGACGC
CGGCCTCCTCGCCGTCGCCTACTCCGCCGTCGCCGTCACCGGGGTCTCCTACTACCTCCAGGCGTGGTGCATCCAGAAGA
AGGGGCCCGTGTTCCTGGCCATGTCCAGCCCGCTCAGCTTCGTCTTCACCATCTTCTGCTCCTCCTTCTTCCTCGGCGAG
GTCGTCCACCTCGGCAGCGTCGTCGGCGGGGTCCTGATGGTGGCCGGCCTCTACAGCGTGCTCTGGGGCAAGAGCAAGGA
GCACGACACGCTCACGGTCGCCGCCGGACAGCAGGAAGAAGACGCTGCTGCACCACCCGCTGCAGAGAGCAGCAGCAGCA
GTGACAATGAGAGCAAACACCAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22124.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis