Browse Element(s) Details


OsAffx.2225.1.S1_at

Description tigr:9629.m04176
TID=OsAffx.2225.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4338011/11glycosyltransferase family protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43360Os.30361.1.S1_at11/111+25118981..25121220Myosin tail family protein, expressed
LOC_Os01g43360Os.30361.2.S1_x_at7/111+25118981..25121220Myosin tail family protein, expressed
LOC_Os01g43370Os.9195.1.S1_at11/111+25135378..25140247expressed protein
LOC_Os01g43380OsAffx.2225.1.S1_at11/111+25140513..25147244glycosyltransferase family protein 1, putative, expressed
LOC_Os01g43380Os.41226.1.S1_at6/111+25140513..25147244glycosyltransferase family protein 1, putative, expressed
LOC_Os01g43390Os.32068.1.S1_at11/111+25150846..25154987Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
LOC_Os01g43400Os.14096.1.S1_at8/111+25159888..25160988expressed protein
LOC_Os01g43410Os.27820.1.S1_at11/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43410OsAffx.32230.1.A1_x_at1/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43410OsAffx.32301.1.A1_at1/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43420Os.6537.1.S1_at11/111+25170580..25173763expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2225.1.S1_at--65--5231Chr01:25142601..25142625 (25 bp)
GAATTTCCGATGATGCTGCCAAACT
LOC_Os01g43380
OsAffx.2225.1.S1_at--1052--4771Chr01:25142587..25142611 (25 bp)
GCTGCCAAACTGAACTGAATGCTGT
LOC_Os01g43380
OsAffx.2225.1.S1_at--754--10511Chr01:25142502..25142526 (25 bp)
TTCAAAGGATGTATGGCGTGCAGCT
LOC_Os01g43380
OsAffx.2225.1.S1_at--811--6291Chr01:25142476..25142500 (25 bp)
GATGATGATTTGCATACCCTGCCAC
LOC_Os01g43380
OsAffx.2225.1.S1_at--670--1811Chr01:25142461..25142485 (25 bp)
ACCCTGCCACTAATGCCTAATGATG
LOC_Os01g43380
OsAffx.2225.1.S1_at--317--5631Chr01:25142434..25142458 (25 bp)
GACACTTGGTCTGTGATGCAAAGCT
LOC_Os01g43380
OsAffx.2225.1.S1_at--569--5131Chr01:25142417..25142441 (25 bp)
GCAAAGCTGGGTTTTGCCTACGAGA
LOC_Os01g43380
OsAffx.2225.1.S1_at--84--1051Chr01:25142365..25142389 (25 bp)
AGGTGCACATTATCTCTTTTGGAAT
LOC_Os01g43380
OsAffx.2225.1.S1_at--37--2811Chr01:25142311..25142335 (25 bp)
AAGATGTCACTAGCTAACTGTTGGT
LOC_Os01g43380
OsAffx.2225.1.S1_at--1133--2171Chr01:25142258..25142282 (25 bp)
ACACTGCTACTAATATTTGCTCAAA
LOC_Os01g43380
OsAffx.2225.1.S1_at--1025--9171Chr01:25142224..25142248 (25 bp)
TGCCTGTTATCTTTCTACTAGAGAA
LOC_Os01g43380
Target Sequence 
GAATTTCCGATGATGCTGCCAAACTGAACTGAATGCTGTTATGGATGAACTAATCCACTACACAATTACTATCTTGAAGG
TCAGCTGTTCTGAAAGCTTTTCAAAGGATGTATGGCGTGCAGCTTGATGATGATTTGCATACCCTGCCACTAATGCCTAA
TGATGGAGACACTTGGTCTGTGATGCAAAGCTGGGTTTTGCCTACGAGATCATTCCTGGAATTTGTAATGTTCTCAAGGT
GCACATTATCTCTTTTGGAATTCAATAGTCAACATAGCAGTATTAAGTGGAAGATGTCACTAGCTAACTGTTGGTGTATA
CATTTCAAAGCACAAGTACACCAACACTGCTACTAATATTTGCTCAAAATAGCTAAATGCCTGTTATCTTTCTACTAGAG
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2225.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis