Browse Element(s) Details


OsAffx.22295.1.S1_at

Description gb:NM_187402.1
DB_XREF= gi:34901889
GEN=OSJNBa0036M16.11
TID=OsAffx.22295.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0036M16.11 (OSJNBa0036M16.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g333707/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33330Os.16984.2.S1_a_at11/117+19918642..19922640RNA Binding Protein 45, putative, expressed
LOC_Os07g33340Os.24708.1.S1_at11/117+19924412..19930300DEAD/DEAH box helicase family protein, expressed
LOC_Os07g33350Os.49631.2.S1_x_at11/117+19933799..19934729Hsp20/alpha crystallin family protein, expressed
LOC_Os07g33360Os.24533.1.S1_x_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.24533.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.46297.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33370OsAffx.22295.2.S1_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.2.S1_x_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.1.S1_at7/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33380OsAffx.28728.1.S1_at11/117+19955539..19956483hypothetical protein
LOC_Os07g33390Os.47752.1.S1_at9/117+19960426..19962128ATPase, AAA family protein, expressed
LOC_Os07g33390OsAffx.20433.1.S1_x_at2/117+19960426..19962128ATPase, AAA family protein, expressed
LOC_Os07g33400Os.23959.1.A1_x_at10/117+19963975..19968222hypothetical protein
LOC_Os07g33400Os.23959.1.A1_at5/117+19963975..19968222hypothetical protein
LOC_Os07g33400Os.55693.1.S1_at1/117+19963975..19968222hypothetical protein
LOC_Os07g33410OsAffx.1381.2.A1_at6/117+19968831..19972476ATPase, AAA family protein
LOC_Os07g33410OsAffx.20433.1.S1_x_at1/117+19968831..19972476ATPase, AAA family protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22295.1.S1_at--377--1791Chr07:19943254..19943473 (25 bp)
ACCGATGACATCATGCACATGATTC
LOC_Os07g33370
OsAffx.22295.1.S1_at--1115--3511Chr07:19943243..19943264 (22 bp)
CATGCACATGATTCAGAAGTTGAGA
LOC_Os07g33370
OsAffx.22295.1.S1_at--302--6651Chr07:19943225..19943249 (25 bp)
GTTGAGAGTTAACTGTTTCCGTCTT
LOC_Os07g33370
OsAffx.22295.1.S1_at--496--6011Chr07:19943222..19943246 (25 bp)
GAGAGTTAACTGTTTCCGTCTTGTT
LOC_Os07g33370
OsAffx.22295.1.S1_at--814--9811Chr07:19943216..19943240 (25 bp)
TAACTGTTTCCGTCTTGTTTCTCCA
LOC_Os07g33370
OsAffx.22295.1.S1_at--69--10811Chr07:19943202..19943226 (25 bp)
TTGTTTCTCCAGGTACGGCTACAGA
LOC_Os07g33370
OsAffx.22295.1.S1_at--936--6831Chr07:19943200..19943224 (25 bp)
GTTTCTCCAGGTACGGCTACAGAGC
LOC_Os07g33370
OsAffx.22295.1.S1_at--684--431Chr07:19942418..19942565 (25 bp)
ATCTTGACAAGAGGAACGGACGCAC
NONE
OsAffx.22295.1.S1_at--102--3231Chr07:19942411..19942431 (21 bp)
CAAGAGGAACGGACGCACCGGAGTC
NONE
OsAffx.22295.1.S1_at--1025--5791Chr07:19942400..19942424 (25 bp)
GACGCACCGGAGTCGCTAAGGACAA
NONE
OsAffx.22295.1.S1_at--608--9771Chr07:19942384..19942408 (25 bp)
TAAGGACAACAATTTGCGGCGGCTC
NONE
Target Sequence 
ACCGATGACATCATGCACATGATTCAGAAGTTGAGAGTTAACTGTTTCCGTCTTGTTTCTCCAGGTACGGCTACAGAGCA
TTCGGAGAAGTGCTGTCAGACAATTGTCAATGCTGGTGCTGTCGAAATTCTGCTGAAGCAAATCAATTTGCTGAACCGTG
GAGTTCCAGACCAAGAAGTCCTGAAACAAGTGCTCTTCACTTTGAGAAACATCGCACGATTCAGGAACCTTCAACCAGTG
CTAGCTAACACTCCACAGGCAGTTGAAATTGTTTTCCAGGAGTTGCTGAGGAGCAAAACGGAAGGGTTCTTCGTCGCGTG
TGATATCTTGAAGAGGCTATGCGAGTCGGAAGAAGGCCACAAAATCGCACGAGCTCTGAAGCGCCACATCAGAAGGCTGG
GCTGCCTGGTGCAAGAACTCGAGAAGAAGGTGGATCTTGACAAGAGGAACGGACGCACCGGAGTCGCTAAGGACAACAAT
TTGCGGCGGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22295.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis