Browse Element(s) Details


OsAffx.22532.2.S1_x_at

Description tigr:9635.m04682
TID=OsAffx.22532.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DEADDEAH box helicase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4658011/11ATP-dependent RNA helicase DDX47, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46540Os.9234.1.S1_at10/117+27789427..27797803HEAT repeat family protein, expressed
LOC_Os07g46540Os.47368.1.S1_x_at10/117+27789427..27797803HEAT repeat family protein, expressed
LOC_Os07g46550OsAffx.16735.1.S1_at11/117+27798862..27800717Annexin family protein
LOC_Os07g46560Os.31545.1.S1_at11/117+27806098..27809817Ubiquitin ligase SINAT5, putative, expressed
LOC_Os07g46570Os.37097.1.S1_at11/117+27812440..27813522Glutaredoxin family protein, expressed
LOC_Os07g46580OsAffx.22532.2.S1_x_at11/117+27818221..27822069ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os07g46590Os.14772.1.S1_s_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.1.S1_a_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.2.S1_x_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.1.S2_a_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.14772.1.S1_x_at2/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46600Os.27129.1.S1_at11/117+27839695..27843713RNA pseudouridylate synthase family protein, expressed
LOC_Os07g46610Os.44613.1.S1_at11/117+27844412..27846100Cis-zeatin O-glucosyltransferase 2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22532.2.S1_x_at--208--1531Chr07:27820833..27820857 (25 bp)
AGCATGATCATGGTCTTTGTCCGGA
LOC_Os07g46580
OsAffx.22532.2.S1_x_at--529--8331Chr07:27820873..27820897 (25 bp)
GGCTCCTTGCTCTTATGCTCAGAAA
LOC_Os07g46580
OsAffx.22532.2.S1_x_at--890--2691Chr07:27820909..27820933 (25 bp)
AAGCTATTTCTATCAGCGGCCAAAT
LOC_Os07g46580
OsAffx.22532.2.S1_x_at--601--751Chr07:27821114..27821138 (25 bp)
ATGTAGCAAGCCGTGGTCTCGATAT
LOC_Os07g46580
OsAffx.22532.2.S1_x_at--471--7811Chr07:27821154..27821178 (25 bp)
GGTCATCAATTACGATTTCCCACTG
LOC_Os07g46580
OsAffx.22532.2.S1_x_at--565--3591Chr07:27821338..27821362 (25 bp)
CATTCATCGGGTGGGCAGGACTGCA
LOC_Os07g46580
OsAffx.22532.2.S1_x_at--531--1971Chr07:27821357..27821381 (25 bp)
ACTGCACGTGCAGGGCAATCAGGAT
LOC_Os07g46580
OsAffx.22532.2.S1_x_at--142--271Chr07:27821380..27821404 (25 bp)
ATATGCTGTGTCTTTGGTGAATCAA
LOC_Os07g46580
OsAffx.22532.2.S1_x_at--1043--8251Chr07:27821411..27821435 (25 bp)
GGCGAATTTTTCAAGCTAACCGAGC
LOC_Os07g46580
OsAffx.22532.2.S1_x_at--349--1411Chr07:27821547..27821571 (25 bp)
AGAAATCCCGGCTCGCAAGGTTGAT
LOC_Os07g46580
OsAffx.22532.2.S1_x_at--565--971Chr07:27822014..27822038 (25 bp)
AGGAGGCTCCTGTTTCCAGTAGATC
LOC_Os07g46580
Target Sequence 
AGCATGATCATGGTCTTTGTCCGGACCTGCGAGTCAACAAGGCTCCTTGCTCTTATGCTCAGAAACCTTCGATTTAAAGC
TATTTCTATCAGCGGCCAAATGAGTCAGGATAAGAGACTAGGTGCTTTAAACAGGTTTAGGACCAGAGATTGCAATATCC
TTGTTTGCACGGATGTAGCAAGCCGTGGTCTCGATATTCAAGGAGTTGATGTGGTCATCAATTACGATTTCCCACTGAAC
TCTAAGGATTACATTCATCGGGTGGGCAGGACTGCACGTGCAGGGCAATCAGGATATGCTGTGTCTTTGGTGAATCAATT
TGAGGGCGAATTTTTCAAGCTAACCGAGCAGTTCCTTGGGGGTGAAGAAATCCCGGCTCGCAAGGTTGATGCAGATGAAA
TAATGATACTTCATGAGCGCATATACGACTCAAAGAGAATCGCATTGAAGACAATGAACGAGAGTGGTTACCACAAGAGG
ATGCGTAGAAGGATGGAAGATGATGAGGAAGAGGTGGAGGAGGCTCCTGTTTCCAGTAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22532.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis