Browse Element(s) Details


OsAffx.22627.1.S1_at

Description gb:NM_187775.1
DB_XREF= gi:34902635
GEN=P0492E07.2
TID=OsAffx.22627.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) G-protein beta family-like protein (P0492E07.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2253410/11WD-repeat protein 18, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22494Os.33350.3.S1_x_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.3.S1_x_at11/117+12651670..12654761expressed protein
LOC_Os07g22494OsAffx.5404.1.S1_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.5530.2.S1_s_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.2.S1_x_at8/117+12651670..12654761expressed protein
LOC_Os07g22494Os.33350.1.S1_x_at4/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.2.S1_s_at4/117+12651670..12654761expressed protein
LOC_Os07g22494Os.5530.2.S1_x_at2/117+12651670..12654761expressed protein
LOC_Os07g22494Os.42141.1.S1_x_at1/117+12651670..12654761expressed protein
LOC_Os07g22510Os.30411.1.S1_at11/117+12663580..12664674expressed protein
LOC_Os07g22520OsAffx.22628.1.S1_at11/117+12666279..12668588hypothetical protein
LOC_Os07g22534Os.30694.3.S1_x_at11/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.30694.1.S1_at11/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.30694.2.S1_at10/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534OsAffx.22627.1.S1_at10/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.7923.1.S1_x_at6/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.32421.1.A1_at1/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22550OsAffx.22699.1.S1_x_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.16111.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.20615.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.10039.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22560OsAffx.22250.2.S1_x_at11/117+12692786..12695518hypothetical protein
LOC_Os07g22570Os.34643.1.S1_at11/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22570Os.29747.1.S1_s_at4/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22570Os.29747.1.S1_at1/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22580Os.32592.1.S1_at11/117+12703673..12706326RhoGAP domain containing protein, expressed
LOC_Os07g22580Os.51549.1.S1_at1/117+12703673..12706326RhoGAP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22627.1.S1_at--439--3611Chr07:12682126..12682150 (25 bp)
CTTTTGGGAGGTCAGAGCATTTGCT
LOC_Os07g22534
OsAffx.22627.1.S1_at--932--4871Chr07:12682104..12682128 (25 bp)
GCTATTGATTTCTTCTTCTATGGTA
LOC_Os07g22534
OsAffx.22627.1.S1_at--837--10551Chr07:12682089..12682113 (25 bp)
TTCTATGGTAAAACACTCGCTAGTT
LOC_Os07g22534
OsAffx.22627.1.S1_at--1022--7131Chr07:12682047..12682071 (25 bp)
GTCATTGCTGCTTTTTGTGCACTTT
LOC_Os07g22534
OsAffx.22627.1.S1_at--779--10811NONE
TTGTGTACTGTTTCGGAAGCCCATC
NONE
OsAffx.22627.1.S1_at--765--10311Chr07:12681129..12681153 (25 bp)
TTTCTCGTTTGGATTCGGTGTCTAC
LOC_Os07g22534
OsAffx.22627.1.S1_at--598--6571Chr07:12681118..12681142 (25 bp)
GATTCGGTGTCTACGACCGTGCACA
LOC_Os07g22534
OsAffx.22627.1.S1_at--974--3491Chr07:12680969..12681049 (25 bp)
CATGGGCTCAATGACGAGGTTCGTC
LOC_Os07g22534
OsAffx.22627.1.S1_at--1081--6151Chr07:12680954..12680975 (22 bp)
GAGGTTCGTCTCATCGTCGCTGAGC
LOC_Os07g22534
OsAffx.22627.1.S1_at--116--891Chr07:12680879..12680903 (25 bp)
AGGCCACTAGCACTTGTCTGTCAGA
LOC_Os07g22534
OsAffx.22627.1.S1_at--470--3431Chr07:12680858..12680882 (25 bp)
CAGATCCGGTGTTGGGCTGCTGATT
LOC_Os07g22534
Target Sequence 
CTTTTGGGAGGTCAGAGCATTTGCTATTGATTTCTTCTTCTATGGTAAAACACTCGCTAGTTTTGGGGAACAAACAGTTG
TCATTGCTGCTTTTTGTGCACTTTGTGTACTGTTTCGGAAGCCCATCCGCTCCTTTTCTCGTTTGGATTCGGTGTCTACG
ACCGTGCACACGCCGAATACGGCAGCCCCAACTGCTCAGGTGCCAGATCTGGCCAATGCGGCGGCTCGAGCAGCAAGGCA
TGGGCTCAATGACGAGGTTCGTCTCATCGTCGCTGAGCTTTTCTCCACCCTCAACAAGCTCATCTTCTCCCCTTCTACCT
GGAGCCGGAGGCCACTAGCACTTGTCTGTCAGATCCGGTGTTGGGCTGCTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22627.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis