Browse Element(s) Details


OsAffx.22801.1.S1_at

Description tigr:9629.m00304
TID=OsAffx.22801.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0389011/11seed specific protein Bn15D17A, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03850OsAffx.10584.1.S1_at7/111+1628808..1629835hypothetical protein
LOC_Os01g03850Os.52655.1.S1_at1/111+1628808..1629835hypothetical protein
LOC_Os01g03860NANA1+1634909..1635838hypothetical protein
LOC_Os01g03870Os.20597.1.S1_at11/111+1638036..1640953expressed protein
LOC_Os01g03880Os.47130.4.A1_x_at3/111+1643960..1644217retrotransposon protein, putative, unclassified
LOC_Os01g03890OsAffx.22801.1.S1_at11/111+1654178..1655190seed specific protein Bn15D17A, putative
LOC_Os01g03900Os.31056.1.S1_at9/111+1667277..1667775expressed protein
LOC_Os01g03914Os.11240.1.S1_at11/111+1669833..1677251Metal tolerance protein C3, putative, expressed
LOC_Os01g03914OsAffx.23104.1.S1_at11/111+1669833..1677251Metal tolerance protein C3, putative, expressed
LOC_Os01g03914Os.54615.1.S1_at1/111+1669833..1677251Metal tolerance protein C3, putative, expressed
LOC_Os01g03930OsAffx.1923.1.S1_at11/111+1678212..1678615hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22801.1.S1_at--1023--4111Chr01:1654732..1654756 (25 bp)
CGCGCCAAGTTCAAGAGGCCCGGCG
LOC_Os01g03890
OsAffx.22801.1.S1_at--329--4251Chr01:1654832..1654856 (25 bp)
CCGTCGATGTGATAAGGCAGGCGCA
LOC_Os01g03890
OsAffx.22801.1.S1_at--729--2931Chr01:1654845..1654869 (25 bp)
AAGGCAGGCGCAGCCGCTCAACTGG
LOC_Os01g03890
OsAffx.22801.1.S1_at--636--9671Chr01:1654883..1654907 (25 bp)
TCAGCCACGAGTCGGCGAGCCACGA
LOC_Os01g03890
OsAffx.22801.1.S1_at--833--1371Chr01:1654922..1654946 (25 bp)
AGAGCGAGGGCCACAGCAACGACAC
LOC_Os01g03890
OsAffx.22801.1.S1_at--469--1091Chr01:1654928..1654952 (25 bp)
AGGGCCACAGCAACGACACGGCCGA
LOC_Os01g03890
OsAffx.22801.1.S1_at--39--7531Chr01:1654957..1654981 (25 bp)
GTGGACGGCTCCCACGTCAGCCAGT
LOC_Os01g03890
OsAffx.22801.1.S1_at--280--1811Chr01:1655027..1655051 (25 bp)
ACGCCGGCCTAGACCTCACATTAGG
LOC_Os01g03890
OsAffx.22801.1.S1_at--104--1391Chr01:1655037..1655061 (25 bp)
AGACCTCACATTAGGTCTACCGCCG
LOC_Os01g03890
OsAffx.22801.1.S1_at--629--4511Chr01:1655067..1655091 (25 bp)
GCCGCCGGTGCAAAAGACCGAGCCG
LOC_Os01g03890
OsAffx.22801.1.S1_at--448--4411Chr01:1655111..1655135 (25 bp)
GCCAGCAGCAACACGATCATCGGAA
LOC_Os01g03890
Target Sequence 
CGCGCCAAGTTCAAGAGGCCCGGCGGCGGCGCCGCCGCCGCCCACAGGTCCGACCATGCCGCCTTCGAGCTCGTCTTCTC
CAAGCCCGCCGCCGCCATGGCCGTCGATGTGATAAGGCAGGCGCAGCCGCTCAACTGGGCGCCCGGGGCGCTCAGCCACG
AGTCGGCGAGCCACGACGCCGCGCCGCCGGAGAGCGAGGGCCACAGCAACGACACGGCCGACACCGTGGACGGCTCCCAC
GTCAGCCAGTCGGAGCCGGAGCCGAGAGCGACGTCGGCGGCGACCGAGGTGCACGACGCCGGCCTAGACCTCACATTAGG
TCTACCGCCGCCGCCGCCGCCGGTGCAAAAGACCGAGCCGGCGGACAGCGACGGCGGCAGCCAGCAGCAACACGATCATC
GGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis