Browse Element(s) Details


OsAffx.22805.1.S1_at

Description gb:NM_184177.1
DB_XREF= gi:34895445
GEN=P0037C04.17
TID=OsAffx.22805.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative Bowman Birk tryspin inhibitor (P0037C04.17), mRNA.
PROD=putative Bowman Birk tryspin inhibitor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g033807/11Bowman-Birk type bran trypsin inhibitor precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03310Os.32459.1.S1_at11/111+1335041..1335900Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03310Os.32459.2.S1_x_at5/111+1335041..1335900Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320Os.12713.1.S2_a_at11/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320Os.32459.2.S1_x_at6/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320OsAffx.4805.1.S1_at1/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03330Os.19472.1.S1_at10/111+1341395..1343017Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03330Os.32459.2.S1_x_at1/111+1341395..1343017Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03340Os.4653.1.S1_at11/111+1344403..1345525Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03340Os.37729.1.S1_s_at11/111+1344403..1345525Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03350NANA1+1347622..1347909hypothetical protein
LOC_Os01g03360Os.37729.1.S1_s_at11/111+1350456..1351604Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03360Os.32459.2.S1_x_at1/111+1350456..1351604Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03370OsAffx.10893.1.S1_x_at11/111+1353403..1358059Protein kinase domain containing protein
LOC_Os01g03370OsAffx.10893.2.S1_at11/111+1353403..1358059Protein kinase domain containing protein
LOC_Os01g03380OsAffx.22805.1.S1_at7/111+1360512..1361069Bowman-Birk type bran trypsin inhibitor precursor, putative
LOC_Os01g03390Os.22594.1.S1_at11/111+1362345..1363244Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03390Os.32459.2.S1_x_at1/111+1362345..1363244Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03400OsAffx.10894.1.S1_at11/111+1365693..1366594Ubiquitin ligase sina, putative
LOC_Os01g03410Os.17213.1.S1_x_at1/111+1369765..1370940hypothetical protein
LOC_Os01g03410OsAffx.25095.5.S1_x_at1/111+1369765..1370940hypothetical protein
LOC_Os01g03420OsAffx.10592.1.S1_at10/111+1371971..1374044Seven in absentia protein family protein
LOC_Os01g03429OsAffx.23100.1.S1_x_at11/111+1376493..1378945hypothetical protein
LOC_Os01g03429OsAffx.23100.1.S1_at11/111+1376493..1378945hypothetical protein
LOC_Os01g03440OsAffx.11270.1.S1_at8/111+1380448..1381886hypothetical protein
LOC_Os01g03440OsAffx.11270.1.S1_x_at7/111+1380448..1381886hypothetical protein
LOC_Os01g03452OsAffx.31552.2.S1_at10/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.11270.1.S1_x_at6/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.11270.1.S1_at6/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.31552.3.S1_x_at5/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.31552.1.S1_x_at4/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.3613.1.S1_x_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.22940.1.S1_s_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452Os.6098.1.A1_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.3613.1.S1_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.23624.1.S1_at1/111+1383210..1391278hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22805.1.S1_at--277--8371Chr01:1360974..1360998 (25 bp)
GGCGAACGACGACACCAATACCATA
LOC_Os01g03380
OsAffx.22805.1.S1_at--526--5451Chr01:1360971..1360995 (25 bp)
GAACGACGACACCAATACCATACGC
LOC_Os01g03380
OsAffx.22805.1.S1_at--163--6051Chr01:1360693..1360717 (25 bp)
GAGATTGCTGCGACATGGACATCTG
LOC_Os01g03380
OsAffx.22805.1.S1_at--855--2111Chr01:1360681..1360705 (25 bp)
ACATGGACATCTGCAGCAGGTCTCT
LOC_Os01g03380
OsAffx.22805.1.S1_at--756--4331Chr01:1360545..1360569 (25 bp)
CCATGATTGGTTCAGAGGCGAGCCA
LOC_Os01g03380
OsAffx.22805.1.S1_at--229--6751Chr01:1360536..1360560 (25 bp)
GTTCAGAGGCGAGCCAGGTCCCAGT
LOC_Os01g03380
OsAffx.22805.1.S1_at--439--991Chr01:1360521..1360545 (25 bp)
AGGTCCCAGTTGCACACCCGACGAA
LOC_Os01g03380
OsAffx.22805.1.S1_at--888--6351Chr01:1359918..1359938 (21 bp)
GATCCAGTCGATCTGACCACGAAGG
NONE
OsAffx.22805.1.S1_at--529--7211Chr01:1359599..1359932 (25 bp)
GTCGATCTGACCACGAAGGATTTAG
NONE
OsAffx.22805.1.S1_at--943--3891Chr01:1359567..1359591 (25 bp)
CTGGATTTCTTCAGAGCCTGATTGT
NONE
OsAffx.22805.1.S1_at--261--6531Chr01:1359564..1359588 (25 bp)
GATTTCTTCAGAGCCTGATTGTTCA
NONE
Target Sequence 
GGCGAACGACGACACCAATACCATACGCCTCCCCAGCGACGGAGCAAAGTCGCCGAAGATGCCGACGGAGAAGAGGCCGT
GGAAGTGCTGCGACGACATCGAGGAGCAGCCGGCGAGCATCTTCCCGCCGTTCTGGCGGTGCAACGACGAGCTGGAGCCC
AGCCAGTGCGCCGCCCAGTGCGAGGTGTGCCAGGACCAGGAGGCGTCGCCGGGCCGGCTCATCTGCGGCGACGTCTACTG
GGGCGCCGACCCGGGCCCCTTCTGCACGCCGAGGCCGTGGGGAGATTGCTGCGACATGGACATCTGCAGCAGGTCTCTCC
CGCCGATCTGCCGGTGCGCCGACGAGGTGGAGTCGTGCGCCGCCGCGTGCAAGGATTGCCAGCAGCTGGAGTCGTCGTCG
TCGTCGTCGGAGCCTCCTCGCTACGTCTGCCATGATTGGTTCAGAGGCGAGCCAGGTCCCAGTTGCACACCCGACGAACA
CAAGNANGCCGATCCAGTCGATCTGACCACGAAGGATTTAGAAAAAGGCTGGATTTCTTCAGAGCCTGATTGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22805.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis