Browse Element(s) Details


OsAffx.23005.1.S1_at

Description gb:AK108349.1
DB_XREF= gi:32993558
TID=OsAffx.23005.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-B10, full insert sequence.
FL= gb:AK108349.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g042107/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04190Os.51161.2.S1_x_at11/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04190Os.51161.2.S1_at11/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04190Os.51161.1.S1_at9/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04200Os.11244.2.S1_x_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.11244.1.S1_x_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.11244.3.S1_x_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.11244.1.S1_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.55908.1.S1_at1/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04210OsAffx.23005.1.S1_at7/116+1775870..1776166expressed protein
LOC_Os06g04210OsAffx.23005.1.S1_x_at5/116+1775870..1776166expressed protein
LOC_Os06g04220Os.606.1.S1_at11/116+1779475..1780051expressed protein
LOC_Os06g04230Os.38806.1.A1_x_at11/116+1783324..1783827expressed protein
LOC_Os06g04240Os.4773.1.S1_at11/116+1784273..1784878expressed protein
LOC_Os06g04250Os.49653.1.S1_at11/116+1788837..1790295phosphate-responsive 1 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23005.1.S1_at--563--1491Chr06:1775844..1775868 (25 bp)
AGCAACCTGGTCGTGCCGTGCGAGC
NONE
OsAffx.23005.1.S1_at--252--4011Chr06:1775855..1775879 (25 bp)
CGTGCCGTGCGAGCCATGGAGAGGA
NONE
OsAffx.23005.1.S1_at--637--9611Chr06:1775880..1775904 (25 bp)
TCATCGCCATGTCCGTGGTGGGCGC
LOC_Os06g04210
OsAffx.23005.1.S1_at--107--4811Chr06:1775947..1775971 (25 bp)
GCTCGAGAGCTTCGTCCCGCGGCGG
LOC_Os06g04210
OsAffx.23005.1.S1_at--1105--2191Chr06:1776041..1776065 (25 bp)
ACAAGGCCGGCGGAACAGGCGACGG
LOC_Os06g04210
OsAffx.23005.1.S1_at--330--8371Chr06:1776098..1776122 (25 bp)
GGCGTCGCGCGGTTCGATCCAGCGC
LOC_Os06g04210
OsAffx.23005.1.S1_at--192--6371Chr06:1776113..1776137 (25 bp)
GATCCAGCGCGGGATGGGCTCCTCT
LOC_Os06g04210
OsAffx.23005.1.S1_at--904--7651Chr06:1776123..1776147 (25 bp)
GGGATGGGCTCCTCTACTGCTTCGA
LOC_Os06g04210
OsAffx.23005.1.S1_at--139--8651Chr06:1776127..1776151 (25 bp)
TGGGCTCCTCTACTGCTTCGAGACC
LOC_Os06g04210
OsAffx.23005.1.S1_at--249--51Chr06:1776162..1776186 (25 bp)
ATTGACCCTGCTCTGTTCTTCCGAT
NONE
OsAffx.23005.1.S1_at--408--9531Chr06:1776178..1776202 (25 bp)
TCTTCCGATCCCCTCTTGTTTTGGG
NONE
Target Sequence 
AGCAACCTGGTCGTGCCGTGCGAGCCATGGAGAGGATCATCGCCATGTCCGTGGTGGGCGCGGGGCCCGGGAACGTGTTC
GGCCCGGGGATGAGCGCCGGCGCGCTCGAGAGCTTCGTCCCGCGGCGGCAAGCGGGCGCCACCGACAACGCGGCGGCCTC
GGCGGCGGCGGCGGCGGAGGGAACAGGGCGCGGCGCGACAAGGCCGGCGGAACAGGCGACGGCGGCGGCGGAAGGCAGGA
GGGCCGGTGGCGACGGCGTCGCGCGGTTCGATCCAGCGCGGGATGGGCTCCTCTACTGCTTCGAGACCATCTCGCCGCAT
TGACCCTGCTCTGTTCTTCCGATCCCCTCTTGTTTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23005.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis