Browse Element(s) Details


OsAffx.23127.1.S1_at

Description tigr:9629.m00512
TID=OsAffx.23127.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0586011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05810Os.45875.2.S1_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.2.S1_x_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.1.S1_x_at3/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.2.S1_x_at2/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.1.S1_x_at1/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05830Os.10096.1.S1_at11/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.1.S1_a_at11/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.2.S1_x_at10/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.2.S1_at7/111+2788178..2792659expressed protein
LOC_Os01g05840Os.536.1.S1_at11/111+2797316..2800503oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g05850NANA1+2800581..2801646hypothetical protein
LOC_Os01g05860OsAffx.23127.1.S1_at11/111+2802442..2804253pentatricopeptide, putative
LOC_Os01g05870Os.32577.1.S1_at11/111+2807115..2811819Leucine Rich Repeat family protein, expressed
LOC_Os01g05880OsAffx.10926.1.S1_at11/111+2811977..2813203F-box domain containing protein, expressed
LOC_Os01g05890OsAffx.22772.1.S1_at11/111+2814452..2815699F-box domain containing protein
LOC_Os01g05900Os.19803.5.S1_at11/111+2816839..2817576Histone H2B.2, putative, expressed
LOC_Os01g05900OsAffx.10929.1.S1_x_at6/111+2816839..2817576Histone H2B.2, putative, expressed
LOC_Os01g05910OsAffx.23128.1.S1_at10/111+2819284..2820179hypothetical protein
LOC_Os01g05920OsAffx.27060.1.S1_at11/111+2821821..2822267hypothetical protein
LOC_Os01g05930Os.45357.1.S1_at11/111+2822918..2825732SWIM zinc finger family protein, expressed
LOC_Os01g05940OsAffx.22770.2.S1_x_at11/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.4.S1_at11/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.3.S1_x_at2/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.1.S1_x_at1/111+2827127..2833227Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23127.1.S1_at--429--7931Chr01:2803658..2803682 (25 bp)
GGATTCCAGAAGCACTTGAGATTTT
LOC_Os01g05860
OsAffx.23127.1.S1_at--66--9011Chr01:2803691..2803715 (25 bp)
TGAATGATCGTGGTTGTCAGGCCGA
LOC_Os01g05860
OsAffx.23127.1.S1_at--1076--7111Chr01:2803706..2803730 (25 bp)
GTCAGGCCGATGTTGCTACCTACAA
LOC_Os01g05860
OsAffx.23127.1.S1_at--527--6151Chr01:2803798..2803822 (25 bp)
GAGGTTAAGGGCGTCTCTCCAAACA
LOC_Os01g05860
OsAffx.23127.1.S1_at--923--5672Chr01:2803827..2803851 (25 bp)
GACATACTCCTACATTCTGAAGACG
LOC_Os01g05860
OsAffx.23127.1.S1_at--659--7911Chr01:2803903..2803927 (25 bp)
GGTTGCAGACTGGACTCTGATACAT
LOC_Os01g05860
OsAffx.23127.1.S1_at--755--891Chr01:2804013..2804037 (25 bp)
AGGCCCGGATCAACGATCATTTACT
LOC_Os01g05860
OsAffx.23127.1.S1_at--690--9771Chr01:2804039..2804063 (25 bp)
TAATGGTTCATGGACTCCATTCCCA
LOC_Os01g05860
OsAffx.23127.1.S1_at--1068--5691Chr01:2804051..2804075 (25 bp)
GACTCCATTCCCACGATAAACTGGA
LOC_Os01g05860
OsAffx.23127.1.S1_at--221--7991Chr01:2804114..2804138 (25 bp)
GGATGACACCAGAACCAAGGACGAA
LOC_Os01g05860
OsAffx.23127.1.S1_at--1043--5431Chr01:2804173..2804197 (25 bp)
GAACCTGCTACAGAAGAACCTCTTA
LOC_Os01g05860
Target Sequence
GGATTCCAGAAGCACTTGAGATTTTTGGTGAGATGAATGATCGTGGTTGTCAGGCCGATGTTGCTACCTACAACACTTTG
ATAAAACACTTCTGTAAGATTAATCGGATGGAGAAAGTCTATGAGCTTTTGGATGACATGGAGGTTAAGGGCGTCTCTCC
AAACAATATGACATACTCCTACATTCTGAAGACGACAGAGAAACCCAAAGATGTTATTTCATTGATGCAGAGAATGGAGA
AGTCTGGTTGCAGACTGGACTCTGATACATATAACTTAATATTGAACCTTTATGTCAGTTGGGATTATGAGAAAGGGGTT
CAGCTAGTATGGGATGAAATGGAGAGGAATGGATCAGGCCCGGATCAACGATCATTTACTATAATGGTTCATGGACTCCA
TTCCCACGATAAACTGGATGAGGCTTTGCATTATTATAGAACGATGGAGTCGAGAGGGATGACACCAGAACCAAGGACGA
AGCTATTGGTAAAAGCAATACGTATGAAGAAAGATGAACCTGCTACAGAAGAACCTCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23127.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis