Browse Element(s) Details


OsAffx.23162.2.S1_at

Description tigr:9629.m00796
TID=OsAffx.23162.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=oxidoreductase, 2OG-Fe(II) oxygenase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0857011/11oxidoreductase, 2OG-Fe oxygenase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08540Os.46027.1.S1_x_at11/111+4231375..4241333MutS domain III family protein, expressed
LOC_Os01g08540Os.50609.1.S1_at10/111+4231375..4241333MutS domain III family protein, expressed
LOC_Os01g08550Os.23665.1.A1_at11/111+4242248..4246549expressed protein
LOC_Os01g08560Os.5504.1.S2_at11/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08560Os.5504.1.S1_at11/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08560Os.50414.1.S1_at1/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08570OsAffx.23162.2.S1_at11/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08570OsAffx.23162.1.S1_x_at11/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08570OsAffx.23162.1.S1_at6/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08580Os.45973.1.A1_at1/111+4269633..4273135expressed protein
LOC_Os01g08590OsAffx.9715.1.S1_at4/111+4275673..4275915hypothetical protein
LOC_Os01g08600OsAffx.10967.4.S1_at8/111+4278556..4280424expressed protein
LOC_Os01g08600OsAffx.7664.1.S1_x_at1/111+4278556..4280424expressed protein
LOC_Os01g08600OsAffx.10967.1.S1_x_at1/111+4278556..4280424expressed protein
LOC_Os01g08610OsAffx.24445.1.S1_at11/111+4281428..4284885transposase, putative
LOC_Os01g08620NANA1+4287816..4288127hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23162.2.S1_at--509--7051Chr01:4263610..4263634 (25 bp)
GTAACACTAAATATCTGCCTTGGCA
LOC_Os01g08570
OsAffx.23162.2.S1_at--110--10871Chr01:4263629..4263653 (25 bp)
TTGGCAAACACTTCACTGGCGCTGA
LOC_Os01g08570
OsAffx.23162.2.S1_at--529--1951Chr01:4263643..4263667 (25 bp)
ACTGGCGCTGACATGTACTTCCGTG
LOC_Os01g08570
OsAffx.23162.2.S1_at--48--7011Chr01:4263657..4263681 (25 bp)
GTACTTCCGTGGTATACGTTGTGGA
LOC_Os01g08570
OsAffx.23162.2.S1_at--587--1191Chr01:4265903..4265927 (25 bp)
AGTATTTTGTACATCCCAACGTGCC
LOC_Os01g08570
OsAffx.23162.2.S1_at--99--1151Chr01:4265934..4265958 (25 bp)
AGTCCTGCTGCATCATGGTAGTCAC
LOC_Os01g08570
OsAffx.23162.2.S1_at--368--3311Chr01:4265956..4265980 (25 bp)
CACAGGCATGGTGTCTTCTCAGTAA
LOC_Os01g08570
OsAffx.23162.2.S1_at--946--3491Chr01:4266000..4266020 (21 bp)
CATGGTCATGTGGTGCAAAAGCTCA
LOC_Os01g08570
OsAffx.23162.2.S1_at--355--131Chr01:4266361..4266385 (25 bp)
ATTCATGACTGATTTTTCTGGGTTT
LOC_Os01g08570
OsAffx.23162.2.S1_at--612--7871Chr01:4266381..4266405 (25 bp)
GGTTTTGTTGCGAGTGCCAGTTTCA
LOC_Os01g08570
OsAffx.23162.2.S1_at--741--2751Chr01:4266886..4266906 (21 bp)
AAGACAGGCTCGTATCTCTATCAGC
LOC_Os01g08570
Target Sequence 
GTAACACTAAATATCTGCCTTGGCAAACACTTCACTGGCGCTGACATGTACTTCCGTGGTATACGTTGTGGAAATCATGT
TAATTCAGGAACACATGATGAGGAGTATTTTGTACATCCCAACGTGCCCGGACAAGTCCTGCTGCATCATGGTAGTCACA
GGCATGGTGTCTTCTCAGTAACATCTGGACGGAGGGTTAACATGGTCATGTGGTGCAAAAGCTCAGTGTTCAGGGAGATG
AAGAAATTCATGACTGATTTTTCTGGGTTTTGTTGCGAGTGCCAGTTTCAGAGGACGGCAAGACAGGCTCGTATCTCTAT
CAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23162.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis