Browse Element(s) Details


OsAffx.2324.1.S1_at

Description tigr:9629.m05225
TID=OsAffx.2324.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5369011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53640Os.1986.1.S1_at11/111+31145840..31150093retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g53650Os.29084.1.S1_at11/111+31151537..31152517CCCH transcription factor, putative, expressed
LOC_Os01g53660Os.32787.3.S1_s_at11/111+31155551..31158865calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g53660Os.32787.2.S1_x_at10/111+31155551..31158865calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g53670Os.15939.1.S2_at11/111+31159644..31163582ENTH domain containing protein, expressed
LOC_Os01g53670Os.15939.1.S1_at11/111+31159644..31163582ENTH domain containing protein, expressed
LOC_Os01g53670OsAffx.9454.1.S1_x_at5/111+31159644..31163582ENTH domain containing protein, expressed
LOC_Os01g53680Os.1991.1.S1_at11/111+31166981..31168639pyrophosphate-dependent phosphofructo-1-kinase, putative, expressed
LOC_Os01g53690OsAffx.2324.1.S1_at11/111+31173765..31174342hypothetical protein
LOC_Os01g53700Os.12235.1.S1_at10/111+31177491..31183075Mitochondrial processing peptidase alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os01g53710Os.27860.1.A1_at11/111+31195259..31198450Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g53710Os.27860.3.S1_x_at3/111+31195259..31198450Dual specificity phosphatase, catalytic domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2324.1.S1_at--223--2551Chr01:31173851..31173873 (23 bp)
AACTCCCAACCTGGTGTCGACAGTA
LOC_Os01g53690
OsAffx.2324.1.S1_at--917--9351Chr01:31174113..31174133 (21 bp)
TCGACAGTAGGTTTTGAGGTGCATC
LOC_Os01g53690
OsAffx.2324.1.S1_at--540--10751Chr01:31174122..31174146 (25 bp)
TTGAGGTGCATCCTTGGGCCTCGAC
LOC_Os01g53690
OsAffx.2324.1.S1_at--73--4471Chr01:31174139..31174163 (25 bp)
GCCTCGACGGTTTGGCGCATCATGG
LOC_Os01g53690
OsAffx.2324.1.S1_at--929--8211Chr01:31174177..31174201 (25 bp)
GGCAACACAGGCTCGTGTAGAGTTC
LOC_Os01g53690
OsAffx.2324.1.S1_at--1008--891Chr01:31174185..31174209 (25 bp)
AGGCTCGTGTAGAGTTCAGAGTTCA
LOC_Os01g53690
OsAffx.2324.1.S1_at--1045--1331Chr01:31174202..31174226 (25 bp)
AGAGTTCAGACCAGCCAAGTCCATT
LOC_Os01g53690
OsAffx.2324.1.S1_at--12--1371Chr01:31174209..31174233 (25 bp)
AGACCAGCCAAGTCCATTTCACGCG
LOC_Os01g53690
OsAffx.2324.1.S1_at--99--191Chr01:31174224..31174248 (25 bp)
ATTTCACGCGCTCCGTTCAGGAAAA
LOC_Os01g53690
OsAffx.2324.1.S1_at--280--10231Chr01:31174239..31174263 (25 bp)
TTCAGGAAAAGCAAAGGACCGTCGA
LOC_Os01g53690
OsAffx.2324.1.S1_at--244--6191Chr01:31174270..31174294 (25 bp)
GAGGAATAGGGTGCCAACCCCACCA
LOC_Os01g53690
Target Sequence 
AACTCCCAACCTGGTGTCGACAGTAGGTTTTGAGGTGCATCCTTGGGCCTCGACGGTTTGGCGCATCATGGATGGGGTAA
ACGGGGCAACACAGGCTCGTGTAGAGTTCAGAGTTCAGACCAGCCAAGTCCATTTCACGCGCTCCGTTCAGGAAAAGCAA
AGGACCGTCGAGAAGCAGAGGAATAGGGTGCCAACCCCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis