Browse Element(s) Details


OsAffx.23324.1.S1_at

Description tigr:9629.m02049
TID=OsAffx.23324.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2143011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21370OsAffx.11142.1.S1_at11/111+11923420..11925417transposon protein, putative, unclassified
LOC_Os01g21380OsAffx.23323.1.S1_x_at11/111+11926744..11928118FAD dependent oxidoreductase family protein, expressed
LOC_Os01g21380OsAffx.23323.1.S1_at11/111+11926744..11928118FAD dependent oxidoreductase family protein, expressed
LOC_Os01g21390OsAffx.10645.1.S1_at3/111+11929226..11929537hypothetical protein
LOC_Os01g21400NANA1+11930934..11932211retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g21410OsAffx.11144.1.S1_at11/111+11935823..11937913expressed protein
LOC_Os01g21410Os.23598.1.S1_at10/111+11935823..11937913expressed protein
LOC_Os01g21420Os.26827.2.A1_at11/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420Os.26827.2.A1_x_at11/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420OsAffx.17633.1.S1_at4/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420Os.26827.1.A1_at2/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21430OsAffx.23324.1.S1_at11/111+11950277..11951178hypothetical protein
LOC_Os01g21440Os.10187.1.S1_at11/111+11953309..11955047expressed protein
LOC_Os01g21440OsAffx.23325.1.S1_at8/111+11953309..11955047expressed protein
LOC_Os01g21440Os.22454.1.S1_x_at2/111+11953309..11955047expressed protein
LOC_Os01g21450NANA1+11957138..11957680expressed protein
LOC_Os01g21460Os.20538.2.S1_x_at11/111+11959023..11964043expressed protein
LOC_Os01g21480NANA1+11975113..11976164transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23324.1.S1_at--1147--6691Chr01:11950308..11950332 (25 bp)
GTTCGGACACGGAGATTGCCAACTT
LOC_Os01g21430
OsAffx.23324.1.S1_at--187--10591Chr01:11950332..11950356 (25 bp)
TTCTCAGCTCTTTTGACGTCTATGA
LOC_Os01g21430
OsAffx.23324.1.S1_at--31--1291Chr01:11950546..11950570 (25 bp)
AGATCTAGCTCATGCTGGACGTGCC
LOC_Os01g21430
OsAffx.23324.1.S1_at--474--8531Chr01:11950561..11950585 (25 bp)
TGGACGTGCCTCTCACAATAGAATG
LOC_Os01g21430
OsAffx.23324.1.S1_at--871--291Chr01:11950578..11950602 (25 bp)
ATAGAATGCTTCAGACTCGAGTCGA
LOC_Os01g21430
OsAffx.23324.1.S1_at--201--2991Chr01:11950610..11950634 (25 bp)
AATGTCTTCGTTACACCTCAACAAA
LOC_Os01g21430
OsAffx.23324.1.S1_at--726--5051Chr01:11950944..11950968 (25 bp)
GCAGCACGACAGTGACCATCATGGT
LOC_Os01g21430
OsAffx.23324.1.S1_at--402--391Chr01:11950961..11950985 (25 bp)
ATCATGGTGACTCCTACTACGACGG
LOC_Os01g21430
OsAffx.23324.1.S1_at--549--931Chr01:11951014..11951038 (25 bp)
AGGCACGCGCTCAATCAACATTATT
LOC_Os01g21430
OsAffx.23324.1.S1_at--338--8451Chr01:11951068..11951092 (25 bp)
GGCCAAAGGCATTCACCCGAGAGAG
LOC_Os01g21430
OsAffx.23324.1.S1_at--916--5291Chr01:11951098..11951122 (25 bp)
GAAGGTGTTCCGCTTTTACACTCGA
LOC_Os01g21430
Target Sequence 
GTTCGGACACGGAGATTGCCAACTTTCTCAGCTCTTTTGACGTCTATGACGACCGCACCACCGAAAATTCGCTGAACCAA
GAGGAAGTTGCCCGGCTAGCCAGAGAAGCTGAAGAGGAACACGCTAGACTTGAAGAGGAGCGCAAGCGCAGGGAAGAGGA
AGAACGCATGAGGCGAGATCTAGCTCATGCTGGACGTGCCTCTCACAATAGAATGCTTCAGACTCGAGTCGACAACACTA
ATGTCTTCGTTACACCTCAACAAAACAAGTCGGTCGACTCTCGCGACCGGCAGCACGACAGTGACCATCATGGTGACTCC
TACTACGACGGACACTGCGCCCACACTCCTAGCGATATGAGGCACGCGCTCAATCAACATTATTGCGACCGCGAAAATCG
CGCCTACCGTGACGGCCAAAGGCATTCACCCGAGAGAGGCGATGAAGGTGTTCCGCTTTTACACTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis