Browse Element(s) Details


OsAffx.23331.1.S1_s_at

Description gb:NM_183778.1
DB_XREF= gi:34894683
GEN=P0426D06.7
TID=OsAffx.23331.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0426D06.7 (P0426D06.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2181011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21760OsAffx.10689.1.S1_at11/111+12192066..12193294hypothetical protein
LOC_Os01g21760OsAffx.31174.4.S1_x_at1/111+12192066..12193294hypothetical protein
LOC_Os01g21770Os.51634.1.S1_at11/111+12196716..12197133expressed protein
LOC_Os01g21780OsAffx.23331.3.S1_s_at11/111+12202829..12206780hypothetical protein
LOC_Os01g21780OsAffx.23331.2.S1_at9/111+12202829..12206780hypothetical protein
LOC_Os01g21780OsAffx.23331.2.S1_x_at8/111+12202829..12206780hypothetical protein
LOC_Os01g21790NANA1+12207604..12208247hypothetical protein
LOC_Os01g21800NANA1+12213643..12214037hypothetical protein
LOC_Os01g21810OsAffx.23331.1.S1_s_at11/111+12215016..12217248hypothetical protein
LOC_Os01g21810Os.10381.1.S1_at1/111+12215016..12217248hypothetical protein
LOC_Os01g21820Os.27425.1.S1_at11/111+12217806..12230606Preprotein translocase secA subunit, chloroplast precursor, putative, expressed
LOC_Os01g21830OsAffx.11151.1.S1_at11/111+12231086..12231889hypothetical protein
LOC_Os01g21840Os.35344.18.S1_x_at7/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21840OsAffx.22940.5.S1_at7/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21840Os.35344.3.S1_x_at6/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21840OsAffx.22940.5.S1_x_at3/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21850Os.34696.2.S1_x_at11/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21850Os.34696.1.S1_x_at11/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21850Os.34696.2.S1_at10/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21850Os.34696.1.S1_at9/111+12240632..12245527protein transport protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23331.1.S1_s_at--85--5611Chr01:12216503..12216527 (25 bp)
GACAATACCAATACCAGTTCTATCC
LOC_Os01g21810
OsAffx.23331.1.S1_s_at--785--10131Chr01:12216538..12216604 (25 bp)
TATGCATTATGAATCCTGCTACAAT
LOC_Os01g21810
OsAffx.23331.1.S1_s_at--572--4771Chr01:12216619..12216643 (25 bp)
GCAACCCAAGTTGAAGGAACCCACG
LOC_Os01g21810
OsAffx.23331.1.S1_s_at--419--8171Chr01:12216634..12216658 (25 bp)
GGAACCCACGTTGTTGACAGCTAAT
LOC_Os01g21810
OsAffx.23331.1.S1_s_at--693--7571Chr01:12216754..12216778 (25 bp)
GGGCTTTAATATGCCCTTCAACAAG
LOC_Os01g21810
OsAffx.23331.1.S1_s_at--55--6331Chr01:12216845..12216998 (25 bp)
GATGCAACAGCACAAACCACCTGGG
LOC_Os01g21810
OsAffx.23331.1.S1_s_at--739--1711Chr01:12216989..12217013 (25 bp)
ACCACCTGGGAAGTAACGATGACGC
LOC_Os01g21810
OsAffx.23331.1.S1_s_at--542--6311Chr01:12217006..12217030 (25 bp)
GATGACGCAAGATATGCGCCCCATA
LOC_Os01g21810
OsAffx.23331.1.S1_s_at--823--4531Chr01:12217023..12217047 (25 bp)
GCCCCATATCTCAAGTACATCAACA
LOC_Os01g21810
OsAffx.23331.1.S1_s_at--307--6631Chr01:12217050..12217074 (25 bp)
GTTGTGAAACAACACCTGTCGATTC
LOC_Os01g21810
OsAffx.23331.1.S1_s_at--246--2171Chr01:12217061..12217085 (25 bp)
ACACCTGTCGATTCCTCTAATAATA
LOC_Os01g21810
Target Sequence 
GACAATACCAATACCAGTTCTATCCAACAAAAAAATATGCATTATGAATCCTGCTACAATGAACATAGTAACAAGCAACC
CAAGTTGAAGGAACCCACGTTGTTGACAGCTAATTATCATGGGCTTAGAAACATGCATCATCATCACAAAAACATCATCA
ACATGGAACCTTCCAATGTACTGCGGCCTCCTAACTTGAACAATGCAAAGGGCTTTAATATGCCCTTCAACAAGGAAGGA
GTCGATGAAGCCATATATCAGAGCCAACTAATGGCACATCAAGTTTATGCAAATCATGTTGATGCAACAGCACAAACCAC
CTGGGAAGTAACGATGACGCAAGATATGCGCCCCATATCTCAAGTACATCAACATGGTTGTGAAACAACACCTGTCGATT
CCTCTAATAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23331.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis