Browse Element(s) Details


OsAffx.23333.1.S1_at

Description tigr:9629.m02113
TID=OsAffx.23333.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2203911/11hypothetical protein
LOC_Os01g2220911/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21990Os.23135.1.A1_at11/111+12326941..12333707CRS2-associated factor 2, putative, expressed
LOC_Os01g22000Os.31286.1.S1_at10/111+12334153..12335544expressed protein
LOC_Os01g22010Os.12223.1.S1_at10/111+12346190..12348795S-adenosylmethionine synthetase 2, putative, expressed
LOC_Os01g22030OsAffx.23332.1.S1_at8/111+12354422..12354787hypothetical protein
LOC_Os01g22039OsAffx.23333.1.S1_at11/111+12358077..12360921hypothetical protein
LOC_Os01g22039OsAffx.23333.2.S1_x_at10/111+12358077..12360921hypothetical protein
LOC_Os01g22050Os.46012.2.S1_x_at3/111+12364209..12371647retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g22050Os.46012.3.S1_x_at2/111+12364209..12371647retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g22050Os.27088.1.A1_x_at2/111+12364209..12371647retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g22070Os.5189.2.S1_at8/111+12376503..12379688transposon protein, putative, Mutator sub-class
LOC_Os01g22070Os.5189.1.S1_at7/111+12376503..12379688transposon protein, putative, Mutator sub-class
LOC_Os01g22080OsAffx.2057.3.S1_at10/111+12380623..12384109hypothetical protein
LOC_Os01g22080OsAffx.29218.1.S1_s_at8/111+12380623..12384109hypothetical protein
LOC_Os01g22080OsAffx.15653.1.S1_at3/111+12380623..12384109hypothetical protein
LOC_Os01g22080OsAffx.13325.1.S1_at1/111+12380623..12384109hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23333.1.S1_at--776--6672Chr01:12360367..12360391 (25 bp)
GTTGCTCTCTGCATCGAAGCTAAGT
LOC_Os01g22039
OsAffx.23333.1.S1_at--670--6272Chr01:12360410..12360434 (25 bp)
GATGTACCATCGAAAGGCCACCACA
LOC_Os01g22039
OsAffx.23333.1.S1_at--719--2392Chr01:12360436..12360460 (25 bp)
AAACTTCTGCAGGACTGTCTTGATA
LOC_Os01g22039
OsAffx.23333.1.S1_at--621--5312Chr01:12360481..12360505 (25 bp)
GAAGGTATCCCAGCAATCAGAGTAA
LOC_Os01g22039
OsAffx.23333.1.S1_at--569--9772Chr01:12360543..12360567 (25 bp)
TAATGGCCTGATTCTGCCTATTACC
LOC_Os01g22039
OsAffx.23333.1.S1_at--1114--3912Chr01:12360567..12360591 (25 bp)
CGGCCGTATCCCACATTGGATTGAA
LOC_Os01g22039
OsAffx.23333.1.S1_at--16--10552Chr01:12360625..12360649 (25 bp)
TTCATCTATGAGCATGGTCCGGTCA
LOC_Os01g22039
OsAffx.23333.1.S1_at--295--752Chr01:12360698..12360722 (25 bp)
ATGTAGTCTACTACGGTCTCCCTGA
LOC_Os01g22039
OsAffx.23333.1.S1_at--571--2992Chr01:12360755..12360779 (25 bp)
AATGTATGCACGTGGTCGTCTGCTT
LOC_Os01g22039
OsAffx.23333.1.S1_at--322--6732Chr01:12360830..12360854 (25 bp)
GTTCTACAGATGACGGACCAACCCG
LOC_Os01g22039
OsAffx.23333.1.S1_at--258--8492Chr01:12360856..12360880 (25 bp)
TGGCTACACTACACTTCGGTTGATG
LOC_Os01g22039
Target Sequence 
GTTGCTCTCTGCATCGAAGCTAAGTTCCACAAGTATGGGTTCAGATGTACCATCGAAAGGCCACCACACAAACTTCTGCA
GGACTGTCTTGATAGTTCCTTTTTAGAACCTGATGAAGGTATCCCAGCAATCAGAGTAATTGAAGTGCTCAGCAAAACAG
GAGGACTGACAACAACTAATGGCCTGATTCTGCCTATTACCGGCCGTATCCCACATTGGATTGAACACGAAGGCTGGAGC
ATGAAAGAAGTCGCAGAATTCATCTATGAGCATGGTCCGGTCATCGCCGTGGTGTGGGTCGTCAGACATGAATTCCGTGC
ATGTATTGGTGATGTAGTCTACTACGGTCTCCCTGACAGATCACTGAGGGACCGGGAAGACAAGGACCAATGTATGCACG
TGGTCGTCTGCTTTGGCTACAGATTTACTCAATCTTTCGATCTCCATCTCAGTATCATGGATAGTTCTACAGATGACGGA
CCAACCCGGTGGCTACACTACACTTCGGTTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23333.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis