Browse Element(s) Details


OsAffx.23404.1.S1_at

Description gb:NM_194017.1
DB_XREF= gi:34915117
GEN=P0503E05.8
TID=OsAffx.23404.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0503E05.8 (P0503E05.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g261501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26090OsAffx.11210.1.S1_at11/111+14768659..14769260hypothetical protein
LOC_Os01g26100OsAffx.2089.1.S1_at11/111+14770603..14770962hypothetical protein
LOC_Os01g26110OsAffx.23403.1.S1_at4/111+14774594..14775120hypothetical protein
LOC_Os01g26120Os.1740.1.S1_at11/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26120OsAffx.11211.1.S1_at10/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26130Os.40548.1.S1_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.51191.1.S1_x_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.4.S1_x_at10/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.3.A1_at8/111+14781333..14786089expressed protein
LOC_Os01g26150OsAffx.23404.2.S1_at11/111+14790276..14790956hypothetical protein
LOC_Os01g26150OsAffx.23404.1.S1_at1/111+14790276..14790956hypothetical protein
LOC_Os01g26160Os.40545.1.S1_x_at11/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.1747.3.S1_at11/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.1747.1.S1_x_at7/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.53108.1.S1_at1/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.27107.1.S1_at1/111+14792157..14804446HASTY, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23404.1.S1_at--216--9411Chr01:14789897..14789921 (25 bp)
TCGTCATCACCAGGGCTGGTGTCGG
NONE
OsAffx.23404.1.S1_at--846--391Chr01:14789902..14789926 (25 bp)
ATCACCAGGGCTGGTGTCGGCTCGC
NONE
OsAffx.23404.1.S1_at--765--5971Chr01:14790002..14790319 (25 bp)
GAGAACTTACGATAGATGATGTGGT
NONE
OsAffx.23404.1.S1_at--21--1351Chr01:14790327..14790732 (25 bp)
AGAGAACGTGGGAGCTTGCCGTCGT
LOC_Os01g26150
OsAffx.23404.1.S1_at--1094--7991Chr01:14790990..14791014 (25 bp)
GGAGGTGTGGTTGTGGTTGGCGGCA
NONE
OsAffx.23404.1.S1_at--295--7911Chr01:14791004..14791028 (25 bp)
GGTTGGCGGCAGTGGTGTCGTCTAC
NONE
OsAffx.23404.1.S1_at--986--8711Chr01:14791019..14791043 (25 bp)
TGTCGTCTACGGTGTGAAGAGTGTA
NONE
OsAffx.23404.1.S1_at--838--8311Chr01:14791057..14791081 (25 bp)
GGCTAACAGAGAGGCGACGGTCCAA
NONE
OsAffx.23404.1.S1_at--999--1291Chr01:14791066..14791090 (25 bp)
AGAGGCGACGGTCCAATCTGTCCAG
NONE
OsAffx.23404.1.S1_at--837--3051Chr01:14791080..14791104 (25 bp)
AATCTGTCCAGTGCCGCTAGGGAGC
NONE
OsAffx.23404.1.S1_at--260--9231Chr01:14791086..14791110 (25 bp)
TCCAGTGCCGCTAGGGAGCTCGTCG
NONE
Target Sequence 
TCGTCATCACCAGGGCTGGTGTCGGCTCGCCGTCTCGCCTTTGGCCGACTCTCCCTGTGGTGGATCCGTGGAGAAGAGAG
AAGAGAGGAGAGGAGGAGAGGAGAAGAGAACTTACGATAGATGATGTGGTGGAAGAGAGAGAACGTGGGAGCTTGCCGTC
GTTTCCCATTCTGTGCCGCTCACCTCGAGGCAGCCCCACCGATCTCGTGCCCCGCTCCTACGCTGCTATCATTGTCGCCG
TCTCCTCCTCCATGCCGCTGACCTCGAGGCGGTCACGCCGTGTTGGGGAGGGAGGTGTGGTTGTGGTTGGCGGCAGTGGT
GTCGTCTACGGTGTGAAGAGTGTAGAAGGGGTCAAGGGGCTAACAGAGAGGCGACGGTCCAATCTGTCCAGTGCCGCTAG
GGAGCTCGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis