Browse Element(s) Details


OsAffx.23404.2.S1_at

Description tigr:9629.m02540
TID=OsAffx.23404.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2615011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26090OsAffx.11210.1.S1_at11/111+14768659..14769260hypothetical protein
LOC_Os01g26100OsAffx.2089.1.S1_at11/111+14770603..14770962hypothetical protein
LOC_Os01g26110OsAffx.23403.1.S1_at4/111+14774594..14775120hypothetical protein
LOC_Os01g26120Os.1740.1.S1_at11/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26120OsAffx.11211.1.S1_at10/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26130Os.40548.1.S1_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.51191.1.S1_x_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.4.S1_x_at10/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.3.A1_at8/111+14781333..14786089expressed protein
LOC_Os01g26150OsAffx.23404.2.S1_at11/111+14790276..14790956hypothetical protein
LOC_Os01g26150OsAffx.23404.1.S1_at1/111+14790276..14790956hypothetical protein
LOC_Os01g26160Os.40545.1.S1_x_at11/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.1747.3.S1_at11/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.1747.1.S1_x_at7/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.53108.1.S1_at1/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.27107.1.S1_at1/111+14792157..14804446HASTY, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23404.2.S1_at--204--7571Chr01:14790359..14790383 (25 bp)
TGAGGTTTTCTCAGGTCCAAAGGAA
LOC_Os01g26150
OsAffx.23404.2.S1_at--3--2311Chr01:14790377..14790401 (25 bp)
AAAGGAAGAGTCGAGTTCCTCACCT
LOC_Os01g26150
OsAffx.23404.2.S1_at--1070--7331Chr01:14790437..14790461 (25 bp)
GTGCAAGAACCAATGCCGCAAGCAA
LOC_Os01g26150
OsAffx.23404.2.S1_at--470--8931Chr01:14790490..14790514 (25 bp)
TGACCTCACTGCCTCAACCAAAAAA
LOC_Os01g26150
OsAffx.23404.2.S1_at--839--3771Chr01:14790529..14790553 (25 bp)
CTCGCCACCCACTAGAGGAAGTGGA
LOC_Os01g26150
OsAffx.23404.2.S1_at--1017--4531Chr01:14790597..14790621 (25 bp)
GCCCGATCTATGTTGCCGGAGCCAA
LOC_Os01g26150
OsAffx.23404.2.S1_at--699--8051Chr01:14790633..14790657 (25 bp)
GGAGAGCAGCTTGAGCTTGTCCCAT
LOC_Os01g26150
OsAffx.23404.2.S1_at--468--10811Chr01:14790649..14790673 (25 bp)
TTGTCCCATCGCTAGATTTGCCTGC
LOC_Os01g26150
OsAffx.23404.2.S1_at--367--471Chr01:14790699..14790723 (25 bp)
ATCTCCCACTTTGTGCTGCAGAGCT
LOC_Os01g26150
OsAffx.23404.2.S1_at--1091--2031Chr01:14790706..14790730 (25 bp)
ACTTTGTGCTGCAGAGCTTGCCGTC
LOC_Os01g26150
OsAffx.23404.2.S1_at--269--3831Chr01:14790884..14790908 (25 bp)
CTGCGCTGCGATGGAAAGACACTTA
LOC_Os01g26150
Target Sequence 
TGAGGTTTTCTCAGGTCCAAAGGAAGAGTCGAGTTCCTCACCTGCAAAAATAACTGGTGATAGGCAAAAGTGGAGCATGT
GCAAGAACCAATGCCGCAAGCAACCTGCGCGCCGCTATCCTGCCGCCCCTATGACCTCACTGCCTCAACCAAAAAAAGGG
AGGGGATGCCCTCGCCACCCACTAGAGGAAGTGGAGGAGCCGATGACGGGGCTGATCTACTGCGTCGCCACCCGGCGCGC
CCGATCTATGTTGCCGGAGCCAACGTCCGGAGAAGGAGAGCAGCTTGAGCTTGTCCCATCGCTAGATTTGCCTGCCGAGC
TTGCCGCTGACCTCGTCACCATCTCCCACTTTGTGCTGCAGAGCTTGCCGTCGTTTCCCATTCTGTGCCGCTCACCTCGA
GGCAGCCCCACCGATCTCGTGCCCCGCTCCTACGCTGCTATCATTGTCGCCGTCTCCTCCTCCATGCCGCTGACCTCGAG
GCGGTCACGCCGGTGCCCCATCGAGCTCGGCTTCCTCCGAGCGATCTGCGCTGCGATGGAAAGACACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23404.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis