Browse Element(s) Details


OsAffx.23445.1.S1_x_at

Description tigr:9629.m02813
TID=OsAffx.23445.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2930011/11hypothetical protein
LOC_Os05g150501/11hypothetical protein
LOC_Os01g268081/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29250NANA1+16721546..16724631retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g29260Os.25754.2.S1_x_at3/111+16727495..16730459retrotransposon protein, putative, unclassified
LOC_Os01g29270OsAffx.20387.1.S1_x_at2/111+16734636..16740234retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29280Os.37062.1.S1_at11/111+16741909..16742875expressed protein
LOC_Os01g29280Os.37062.2.S1_x_at8/111+16741909..16742875expressed protein
LOC_Os01g29290OsAffx.9772.1.S1_at11/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290Os.27455.1.S1_at3/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290OsAffx.12169.1.S1_x_at1/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290OsAffx.13774.1.S1_at1/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290Os.27455.1.S1_x_at1/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29300OsAffx.23445.1.S1_at11/111+16749541..16749906hypothetical protein
LOC_Os01g29300OsAffx.23445.1.S1_x_at11/111+16749541..16749906hypothetical protein
LOC_Os01g29310NANA1+16751209..16752267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29320OsAffx.3903.1.S1_at1/111+16752649..16756952retrotransposon protein, putative, unclassified
LOC_Os01g29320OsAffx.30891.1.S1_x_at1/111+16752649..16756952retrotransposon protein, putative, unclassified
LOC_Os01g29320OsAffx.30350.1.S1_at1/111+16752649..16756952retrotransposon protein, putative, unclassified
LOC_Os01g29330Os.23606.1.S1_at11/111+16762724..16763708expressed protein
LOC_Os01g29340NANA1+16764361..16768996retrotransposon protein, putative, unclassified
LOC_Os01g29350OsAffx.11253.1.S1_at11/111+16773987..16774567hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23445.1.S1_x_at--854--1891Chr01:16749574..16749598 (25 bp)
ACGTCGTCAGAACCTCAAACCAAGA
LOC_Os01g29300
OsAffx.23445.1.S1_x_at--658--9671Chr01:16749588..16749612 (25 bp)
TCAAACCAAGATCCCAAAGCCAACT
LOC_Os01g29300
OsAffx.23445.1.S1_x_at--358--2631Chr01:16749591..16749615 (25 bp)
AACCAAGATCCCAAAGCCAACTGGG
LOC_Os01g29300
OsAffx.23445.1.S1_x_at--116--10531Chr01:16749623..16749647 (25 bp)
TTCATGATGGGAACTGTTGGCGGTA
LOC_Os01g29300
OsAffx.23445.1.S1_x_at--901--791Chr01:16749629..16749653 (25 bp)
ATGGGAACTGTTGGCGGTATGTTAT
LOC_Os01g29300
OsAffx.23445.1.S1_x_at--141--2571Chr01:16749634..16749658 (25 bp)
AACTGTTGGCGGTATGTTATGAGAC
LOC_Os01g29300
OsAffx.23445.1.S1_x_at--682--3851Chr01:16749636..16749660 (25 bp)
CTGTTGGCGGTATGTTATGAGACCC
LOC_Os01g29300
OsAffx.23445.1.S1_x_at--646--10116Chr01:16749646..16749670 (25 bp)
TATGTTATGAGACCCTTCGACCAGA
LOC_Os01g29300
OsAffx.23445.1.S1_x_at--762--10591Chr01:16749661..16749685 (25 bp)
TTCGACCAGACGTGCCGAAACCATG
LOC_Os01g29300
OsAffx.23445.1.S1_x_at--910--8551Chr01:16749802..16749826 (25 bp)
TGGAGGCATCTTGGGCAAAGACTGT
LOC_Os01g29300
OsAffx.23445.1.S1_x_at--464--2931Chr01:16749847..16749871 (25 bp)
AAGGCAGATGGCTTCGCCATAGCAA
LOC_Os01g29300
Target Sequence 
ACGTCGTCAGAACCTCAAACCAAGATCCCAAAGCCAACTGGGGCTGAAGTTCATGATGGGAACTGTTGGCGGTATGTTAT
GAGACCCTTCGACCAGACGTGCCGAAACCATGCAACCAGTGGGGGTTCAAGCCCAAGACGTCGAGTCTGTCGGGGCGAAG
TCCCCATGGCGAAGACTATCAAGCAAAGACGGCGAAGGGCGAAGGATCGTGCTGGTATCCCACAAGGTTGGAGGCATCTT
GGGCAAAGACTGTATGGCGAAGAATGTATGGCGAAGGCAGATGGCTTCGCCATAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23445.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis