Browse Element(s) Details


OsAffx.23450.1.S1_at

Description gb:NM_189252.1
DB_XREF= gi:34905587
GEN=B1109A06.3
TID=OsAffx.23450.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (B1109A06.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g296408/11hypothetical protein
LOC_Os09g101902/11hypothetical protein
LOC_Os05g097201/11hypothetical protein
LOC_Os06g277201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g216001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g147901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29600OsAffx.30618.1.S1_at10/111+16915402..16916028hypothetical protein
LOC_Os01g29610Os.43072.1.S1_at11/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.43072.1.S1_x_at11/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.5.S1_at6/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.17455.1.S1_at6/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.3.S1_x_at5/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.3.S1_at4/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.2.S1_at2/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.4.A1_at1/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.12010.1.S1_x_at1/111+16917384..16924325hypothetical protein
LOC_Os01g29610OsAffx.3097.1.S1_x_at1/111+16917384..16924325hypothetical protein
LOC_Os01g29620OsAffx.19542.3.S1_x_at3/111+16928784..16932692retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29640OsAffx.23450.1.S1_at8/111+16939592..16940065hypothetical protein
LOC_Os01g29650NANA1+16943797..16946112retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29660OsAffx.22947.1.S1_x_at9/111+16948266..16949495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29660OsAffx.22947.3.S1_x_at6/111+16948266..16949495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29660OsAffx.22947.2.S1_x_at5/111+16948266..16949495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29670OsAffx.22947.5.S1_x_at3/111+16949589..16952828retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29680Os.31729.2.S1_x_at1/111+16956895..16959666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29690NANA1+16963803..16964305expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23450.1.S1_at--263--3119Chr12:12141076..12141096 (21 bp)
AATATGATTTTAGCCTTATACAGAA
LOC_Os12g21600
OsAffx.23450.1.S1_at--408--2131Chr01:16939554..16939578 (25 bp)
ACAGGATTAACAATGTCATGACGAC
NONE
OsAffx.23450.1.S1_at--794--2451Chr01:16939562..16939586 (25 bp)
AACAATGTCATGACGACATCATTGC
NONE
OsAffx.23450.1.S1_at--1134--3911Chr01:16939606..16939630 (25 bp)
CGGCCAAGCCGAGGCACCAGAAGAA
LOC_Os01g29640
OsAffx.23450.1.S1_at--463--1672Chr09:5543640..5543659 (20 bp)
AGCCGAGGCACCAGAAGAAAGAGCA
LOC_Os09g10190
OsAffx.23450.1.S1_at--1066--8254Chr04:8837081..8837170 (24 bp)
GGCGGCACGACGATGAAAAACGGCT
NONE
OsAffx.23450.1.S1_at--738--1851Chr01:16939665..16939689 (25 bp)
ACGACGATGAAAAACGGCTGGCGAT
LOC_Os01g29640
OsAffx.23450.1.S1_at--131--671Chr01:16939671..16939695 (25 bp)
ATGAAAAACGGCTGGCGATGAGATC
LOC_Os01g29640
OsAffx.23450.1.S1_at--601--1271Chr01:16939853..16939877 (25 bp)
AGATCAAAACAAGGCGGCAACCCAC
LOC_Os01g29640
OsAffx.23450.1.S1_at--1125--7271Chr01:16939935..16939959 (25 bp)
GGGTAGAGCTGACCCTTGCGAAGCC
LOC_Os01g29640
OsAffx.23450.1.S1_at--93--8391Chr01:16939966..16939990 (25 bp)
GGCGACGGCTCAAGGCGGCGTTGAC
LOC_Os01g29640
Target Sequence 
AATATGATTTTAGCCTTATACAGAACAGGATTAACAATGTCATGACGACATCATTGCCGGCGATGGAGGGTTTAGGCGGC
CAAGCCGAGGCACCAGAAGAAAGAGCACGACGAGGGGAACTCACTGAGGGGCGGCACGACGATGAAAAACGGCTGGCGAT
GAGATCGGGAGTGACGACGGGGTACCGATCGATGGTGGCGGCGGAGTTTCAGCGACGGGAGACGACAACCGAGGGGTGGA
CGGGGTTCTCCTCGCAGCTGCGATGCCGAGGGAGGCTGCGGCGAGGTCCGGCGACCTTGGGGTCGATGAGGAGGCTTCGC
CGGAGATCAAAACAAGGCGGCAACCCACTGGTTCACGGTGACGGCAATCTCCCGGCGGGATTTGGCGCAAAAGAACCGGT
GGCCGGGGTAGAGCTGACCCTTGCGAAGCCGAGGGAGGCGACGGCTCAAGGCGGCGTTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23450.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis