Browse Element(s) Details


OsAffx.23598.1.S1_at

Description tigr:9629.m03836
TID=OsAffx.23598.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g532409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53200Os.34925.1.A1_at11/113+30467981..30470072Calmodulin, putative, expressed
LOC_Os03g53200Os.27808.1.S1_s_at11/113+30467981..30470072Calmodulin, putative, expressed
LOC_Os03g53200Os.27808.1.S1_at11/113+30467981..30470072Calmodulin, putative, expressed
LOC_Os03g53210Os.4846.1.S1_at1/113+30470198..30470838expressed protein
LOC_Os03g53220OsAffx.25697.1.S1_at11/113+30473483..30481508U5 small nuclear ribonucleoprotein 200 kDa helicase, putative
LOC_Os03g53230Os.12747.1.S1_at11/113+30482460..30485708Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase, putative, expressed
LOC_Os03g53240Os.54949.1.S1_at11/113+30494313..30495324hypothetical protein
LOC_Os03g53240OsAffx.23598.1.S1_at9/113+30494313..30495324hypothetical protein
LOC_Os03g53240OsAffx.23598.1.S1_x_at8/113+30494313..30495324hypothetical protein
LOC_Os03g53250Os.11644.1.S1_at11/113+30499239..30504143Protein kinase domain containing protein, expressed
LOC_Os03g53260NANA3+30508598..30509008hypothetical protein
LOC_Os03g53270Os.10787.1.S1_at11/113+30511207..30514093Stem-specific protein TSJT1, putative, expressed
LOC_Os03g53280Os.17980.1.S1_at11/113+30514995..30532454WD-40 repeat family protein, putative, expressed
LOC_Os03g53280Os.51285.1.S1_at1/113+30514995..30532454WD-40 repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23598.1.S1_at--863--8011NONE
GGAGGACCTCCATGGATAGGATAAT
NONE
OsAffx.23598.1.S1_at--37--8111NONE
GGACCTCCATGGATAGGATAATTAT
NONE
OsAffx.23598.1.S1_at--977--4333Chr03:13541733..13541753 (21 bp)
CCATGGATAGGATAATTATTACTGA
NONE
OsAffx.23598.1.S1_at--598--9911Chr03:30494571..30494595 (25 bp)
TACTGAGATGTGCACGAGATGCGCA
LOC_Os03g53240
OsAffx.23598.1.S1_at--617--3351Chr03:30494559..30494583 (25 bp)
CACGAGATGCGCAGCGAGGTTCTTA
LOC_Os03g53240
OsAffx.23598.1.S1_at--800--1291Chr03:30494555..30494579 (25 bp)
AGATGCGCAGCGAGGTTCTTAGTGT
LOC_Os03g53240
OsAffx.23598.1.S1_at--362--611Chr03:30494553..30494577 (25 bp)
ATGCGCAGCGAGGTTCTTAGTGTCA
LOC_Os03g53240
OsAffx.23598.1.S1_at--246--4591Chr03:30494551..30494575 (25 bp)
GCGCAGCGAGGTTCTTAGTGTCAAT
LOC_Os03g53240
OsAffx.23598.1.S1_at--155--4091Chr03:30494550..30494574 (25 bp)
CGCAGCGAGGTTCTTAGTGTCAATC
LOC_Os03g53240
OsAffx.23598.1.S1_at--696--6751Chr03:30494451..30494475 (25 bp)
GTTAAGGAATCTCATAGCGGTGAGC
LOC_Os03g53240
OsAffx.23598.1.S1_at--1085--931Chr03:30494447..30494471 (25 bp)
AGGAATCTCATAGCGGTGAGCGACA
LOC_Os03g53240
Target Sequence 
GGAGGACCTCCATGGATAGGATAATTATTACTGAGATGTGCACGAGATGCGCAGCGAGGTTCTTAGTGTCAATCAAAGCG
ATCGCCTCAGCCGTACGACGCGGCGTCGTGCATGCCATGTCGCATATGACGGCGAGCCGCCTAGCCCGGTTAAGGAATCT
CATAGCGGTGAGCGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis