Browse Element(s) Details


OsAffx.23614.1.S1_at

Description tigr:9629.m03908
TID=OsAffx.23614.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4092011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40880OsAffx.2202.1.S1_x_at5/111+23450634..23450846hypothetical protein
LOC_Os01g40890OsAffx.29313.1.S1_at1/111+23452379..23454383transposon protein, putative, Mutator sub-class
LOC_Os01g40900Os.24831.3.S1_s_at10/111+23459312..23462085retrotransposon protein, putative, unclassified
LOC_Os01g40900Os.24831.1.S1_x_at7/111+23459312..23462085retrotransposon protein, putative, unclassified
LOC_Os01g40900Os.24831.3.S1_x_at6/111+23459312..23462085retrotransposon protein, putative, unclassified
LOC_Os01g40900Os.23706.1.A1_x_at1/111+23459312..23462085retrotransposon protein, putative, unclassified
LOC_Os01g40900Os.55127.1.S1_at1/111+23459312..23462085retrotransposon protein, putative, unclassified
LOC_Os01g40910Os.14919.1.S1_at6/111+23464332..23469497SWIM zinc finger family protein
LOC_Os01g40910Os.56216.1.S1_at2/111+23464332..23469497SWIM zinc finger family protein
LOC_Os01g40920OsAffx.23614.1.S1_at11/111+23472036..23474468hypothetical protein
LOC_Os01g40930OsAffx.11414.2.S1_x_at10/111+23480008..23483169hypothetical protein
LOC_Os01g40930OsAffx.11414.1.S1_at9/111+23480008..23483169hypothetical protein
LOC_Os01g40940OsAffx.2202.1.S1_x_at7/111+23489187..23490342hypothetical protein
LOC_Os01g40940Os.57295.1.S1_at1/111+23489187..23490342hypothetical protein
LOC_Os01g40950Os.57295.1.S1_at8/111+23494454..23495173hypothetical protein
LOC_Os01g40960OsAffx.23615.2.S1_s_at11/111+23498111..23498734MtN3/saliva family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23614.1.S1_at--312--5171Chr01:23473782..23473806 (25 bp)
GCAAGCACACATGTATCGACGGATC
LOC_Os01g40920
OsAffx.23614.1.S1_at--169--8331Chr01:23473817..23473841 (25 bp)
GGCTCTGTTGGAGTTTGCTGCCAAA
LOC_Os01g40920
OsAffx.23614.1.S1_at--31--1631Chr01:23473875..23473899 (25 bp)
AGCGATTTCTTTAAACGTCTTGCAA
LOC_Os01g40920
OsAffx.23614.1.S1_at--1066--5951Chr01:23474091..23474115 (25 bp)
GAGAAGTTTTGTCTTGCATCCCAGT
LOC_Os01g40920
OsAffx.23614.1.S1_at--16--4991Chr01:23474106..23474130 (25 bp)
GCATCCCAGTTTACATGCTCGGGTG
LOC_Os01g40920
OsAffx.23614.1.S1_at--1052--7151Chr01:23474134..23474158 (25 bp)
GTCTCATTGGCCATGACGGCTTATT
LOC_Os01g40920
OsAffx.23614.1.S1_at--1107--8291Chr01:23474151..23474175 (25 bp)
GGCTTATTCACTTCATTATTCACGG
LOC_Os01g40920
OsAffx.23614.1.S1_at--116--1771Chr01:23474187..23474211 (25 bp)
ACCGGTACAGGTGCACCGAGTGTAT
LOC_Os01g40920
OsAffx.23614.1.S1_at--834--2531Chr01:23474222..23474246 (25 bp)
GAAGTACACGACACCCAAAGACCTA
LOC_Os01g40920
OsAffx.23614.1.S1_at--511--1251Chr01:23474240..23474264 (25 bp)
AGACCTAGGTTCTTCACTTAAGTGT
LOC_Os01g40920
OsAffx.23614.1.S1_at--502--31Chr01:23474315..23474339 (25 bp)
ATTGGAGGACCCAGCTGCTCTGAAA
LOC_Os01g40920
Target Sequence 
GCAAGCACACATGTATCGACGGATCAGGAAGAAGTGGCTCTGTTGGAGTTTGCTGCCAAACTTGCTAAGAAACAATCGTT
TAAGGACAACAAAAGCGATTTCTTTAAACGTCTTGCAAAGATGACGAATGATCATTTTATACCGCTAGATCTCAACAATC
AATATGTTCCTTTGACTAATTCCAAGATTGTTGATGAGAAGTTTTGTCTTGCATCCCAGTTTACATGCTCGGGTGCCCGT
CTCATTGGCCATGACGGCTTATTCACTTCATTATTCACGGCTAGTGAAGCCACCGGTACAGGTGCACCGAGTGTATCGAA
GAAGAGGAAGTACACGACACCCAAAGACCTAGGTTCTTCACTTAAGTGTTTGGCAGAACATGGTTGCAAGGACATTGAGC
ATTATATATTTACAGTTGCATTGGAGGACCCAGCTGCTCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis