Browse Element(s) Details


OsAffx.23623.1.S1_at

Description tigr:9629.m03975
TID=OsAffx.23623.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4157010/11PP-loop family protein
LOC_Os02g524702/11VEG136 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41516OsAffx.19542.3.S1_x_at5/111+23830700..23832493retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g41522NANA1+23833497..23834608retrotransposon protein, putative, unclassified
LOC_Os01g41530Os.56319.1.S1_at11/111+23836946..23839191F-box domain containing protein, expressed
LOC_Os01g41540OsAffx.2206.1.S1_at11/111+23840209..23840782hypothetical protein
LOC_Os01g41550Os.13623.1.S1_at9/111+23841856..23843623Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g41560OsAffx.23622.1.S1_at11/111+23849278..23850404hypothetical protein
LOC_Os01g41570OsAffx.23623.1.S1_x_at11/111+23857442..23864963PP-loop family protein
LOC_Os01g41570OsAffx.23623.1.S1_at10/111+23857442..23864963PP-loop family protein
LOC_Os01g41580OsAffx.8572.1.S1_s_at11/111+23872400..23873785transposase, putative
LOC_Os01g41580OsAffx.8572.1.S1_at5/111+23872400..23873785transposase, putative
LOC_Os01g41590NANA1+23874092..23875942hypothetical protein
LOC_Os01g41600Os.18250.1.S1_at11/111+23878818..23881100expressed protein
LOC_Os01g41600OsAffx.28171.1.S1_at4/111+23878818..23881100expressed protein
LOC_Os01g41600OsAffx.24197.1.S1_x_at1/111+23878818..23881100expressed protein
LOC_Os01g41610Os.11314.1.S1_at11/111+23881114..23884502mitochondrial ATP synthase g subunit family protein, putative, expressed
LOC_Os01g41620Os.38395.3.S1_x_at9/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.4.S1_x_at8/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.2.S1_x_at7/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.1.S1_at1/111+23888553..23894177transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23623.1.S1_at--1150--2572Chr02:32095209..32095233 (25 bp)
AACCGACTTATTGCAGTATGGCCTG
LOC_Os02g52470
OsAffx.23623.1.S1_at--1056--4092Chr02:32095206..32095230 (25 bp)
CGACTTATTGCAGTATGGCCTGCCA
LOC_Os02g52470
OsAffx.23623.1.S1_at--607--1731Chr01:23858266..23858290 (25 bp)
ACCTTTATAACTACTGGCGAAGATG
LOC_Os01g41570
OsAffx.23623.1.S1_at--849--2531Chr01:23858258..23858282 (25 bp)
AACTACTGGCGAAGATGGGCCAATC
LOC_Os01g41570
OsAffx.23623.1.S1_at--41--8051Chr01:23858198..23858222 (25 bp)
GGAGATTGTTATATATCCTTATTAT
LOC_Os01g41570
OsAffx.23623.1.S1_at--757--251Chr01:23858186..23858210 (25 bp)
ATATCCTTATTATGCAATATCCCAT
LOC_Os01g41570
OsAffx.23623.1.S1_at--974--5191Chr01:23858175..23858197 (23 bp)
GCAATATCCCATATATTCTCATGCA
LOC_Os01g41570
OsAffx.23623.1.S1_at--983--251Chr01:23857866..23858194 (25 bp)
ATATCCCATATATTCTCATGCATAT
LOC_Os01g41570
OsAffx.23623.1.S1_at--609--231NONE
ATATATTCTCATGCATATATTCACC
NONE
OsAffx.23623.1.S1_at--638--9871Chr01:23857477..23857545 (25 bp)
TACATTTCTAGTCAGGACCTCTTCC
LOC_Os01g41570
OsAffx.23623.1.S1_at--10--2071Chr01:23857476..23857544 (25 bp)
ACATTTCTAGTCAGGACCTCTTCCT
LOC_Os01g41570
Target Sequence 
AACCGACTTATTGCAGTATGGCCTGCCATTGAAAATAATTTCTTATAAGGACCTCTATGGCTGGACAATGGATGATATTG
TGAAAGCAATTGGCCTAAAAAATAATTGTACCTTTTGTGGTGTTTTTCGACGTCAGGCACTGGACCGAGGTGCTGCTCTC
TTAAAAGTTGACAAGATTGTGACTGGACATAATGCTGATGACATTGCAGAAACTGTGTTATTGAATATATTACGTGGTGA
TATTGCACGGTTAAGTAGATGTACCTTTATAACTACTGGCGAAGATGGGCCAATCCCAAGATGCAAGCCTTTCAAATACA
CCTATGAGAAGGAGATTGTTATATATCCTTATTATGCAATATCCCATATATTCTCATGCATATATTCACCAAATGCATAC
CGTGGATTTGCTCGCGAATTTATTAAAGATCTGGAAAGGATGAGACCTAGAGCTATACTGGACATCATAAAATCAGGTGA
GAATTTTAGGATCTCCACAACAACAAGGATGCCAGAGCAAGGAACATGTGAACGTTGTGGCTACATTTCTAGTCAGGACC
TCTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23623.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis