Browse Element(s) Details


OsAffx.23637.1.S1_at

Description gb:NM_192756.1
DB_XREF= gi:34912595
GEN=P0046B10.15
TID=OsAffx.23637.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0046B10.15 (P0046B10.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g426603/11hypothetical protein
LOC_Os01g426702/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42620Os.29404.2.S1_at11/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42620Os.29404.2.S1_x_at11/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42620Os.29404.1.S1_at10/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42630Os.14338.1.S1_at10/111+24573980..24576193C-5 cytosine-specific DNA methylase family protein, expressed
LOC_Os01g42630Os.14338.1.S1_x_at7/111+24573980..24576193C-5 cytosine-specific DNA methylase family protein, expressed
LOC_Os01g42640OsAffx.11444.1.S1_at11/111+24576732..24577585ribosomal protein S11 containing protein
LOC_Os01g42650Os.3455.1.S1_at11/111+24582170..24586788cytochrome c oxidase subunit, putative, expressed
LOC_Os01g42660OsAffx.23637.2.S1_s_at11/111+24591364..24593347hypothetical protein
LOC_Os01g42660OsAffx.23637.1.S1_at3/111+24591364..24593347hypothetical protein
LOC_Os01g42670OsAffx.23638.1.S1_at9/111+24596639..24599250hypothetical protein
LOC_Os01g42670OsAffx.23637.1.S1_at2/111+24596639..24599250hypothetical protein
LOC_Os01g42679NANA1+24599981..24600723NA
LOC_Os01g42690Os.35061.1.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_x_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42700Os.8697.1.S2_at11/111+24609589..24612154expressed protein
LOC_Os01g42700Os.8697.1.S1_at11/111+24609589..24612154expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23637.1.S1_at--376--9291NONE
TCCGTCATGCCGCAGAAAAGTGGAA
NONE
OsAffx.23637.1.S1_at--211--131Chr01:24592898..24592922 (25 bp)
ATTCACTCATTCGAACTAACCTGGC
LOC_Os01g42660
OsAffx.23637.1.S1_at--317--9811Chr01:24592914..24592938 (25 bp)
TAACCTGGCTCGCTGTGAGATGAAC
LOC_Os01g42660
OsAffx.23637.1.S1_at--26--871Chr01:24592964..24592988 (25 bp)
ATGGCGGAGTTGTGCCCTGGCCCCT
LOC_Os01g42660
OsAffx.23637.1.S1_at--895--10111NONE
TATGTCACTATATAGCAATGCTCAT
NONE
OsAffx.23637.1.S1_at--907--5191Chr01:24596003..24596027 (25 bp)
GAATTGGGAAACCTGCTCTTGACCG
NONE
OsAffx.23637.1.S1_at--588--9091Chr01:24596016..24596040 (25 bp)
TGCTCTTGACCGTGCAGGAAAAAAC
NONE
OsAffx.23637.1.S1_at--1000--3931Chr01:24596496..24596520 (25 bp)
CGGCATCTACTCCTATTTCATATTT
NONE
OsAffx.23637.1.S1_at--661--2731Chr01:24597215..24597239 (25 bp)
AAGAATCCCCACTATGACGAGGCGA
LOC_Os01g42670
OsAffx.23637.1.S1_at--459--671Chr01:24597228..24597252 (25 bp)
ATGACGAGGCGATCGATGCCCTAAC
LOC_Os01g42670
OsAffx.23637.1.S1_at--251--6391NONE
GATCGATGCCCTAACCGGAATTCAG
NONE
Target Sequence 
TCCGTCATGCCGCAGAAAAGTGGAATAAGAAAGTTGGAAGGGGTAACAATTCACTCATTCGAACTAACCTGGCTCGCTGT
GAGATGAACGAAGTTAGTGGTAACGTGGTAGGTGATGGCGGAGTTGTGCCCTGGCCCCTGTGTTCCCATCCTGACTACAC
CATTGATCGTGCGAGTGCTTCTTTCGTAACTCGACGACTCAACGATTGGGATTGGGGACCCGTGTCCAACGGGGGCAATC
GGCGTCTGGCGACTAGGATCGAGAGCAGCGTTCAGCAAGCAGCTATGTCACTATATAGCAATGCTCATGAAGAACATGAA
TTGGGAAACCTGCTCTTGACCGTGCAGGAAAAAACGAAGCTGCTGCTGCTTTTCTCTCATGATCTCATCAGAGAACAAAA
CAATCAAAATGTCGGAATGGGCCAAAAACACTGCACCGGCATCTACTCCTATTTCATATTTAAGAAAAAAGGGAGCAAGA
ATCCCCACTATGACGAGGCGATCGATGCCCTAACCGGAATTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23637.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis