Browse Element(s) Details


OsAffx.23638.1.S1_at

Description tigr:9629.m04094
TID=OsAffx.23638.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g426709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42620Os.29404.2.S1_at11/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42620Os.29404.2.S1_x_at11/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42620Os.29404.1.S1_at10/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42630Os.14338.1.S1_at10/111+24573980..24576193C-5 cytosine-specific DNA methylase family protein, expressed
LOC_Os01g42630Os.14338.1.S1_x_at7/111+24573980..24576193C-5 cytosine-specific DNA methylase family protein, expressed
LOC_Os01g42640OsAffx.11444.1.S1_at11/111+24576732..24577585ribosomal protein S11 containing protein
LOC_Os01g42650Os.3455.1.S1_at11/111+24582170..24586788cytochrome c oxidase subunit, putative, expressed
LOC_Os01g42660OsAffx.23637.2.S1_s_at11/111+24591364..24593347hypothetical protein
LOC_Os01g42660OsAffx.23637.1.S1_at3/111+24591364..24593347hypothetical protein
LOC_Os01g42670OsAffx.23638.1.S1_at9/111+24596639..24599250hypothetical protein
LOC_Os01g42670OsAffx.23637.1.S1_at2/111+24596639..24599250hypothetical protein
LOC_Os01g42679NANA1+24599981..24600723NA
LOC_Os01g42690Os.35061.1.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_x_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42700Os.8697.1.S2_at11/111+24609589..24612154expressed protein
LOC_Os01g42700Os.8697.1.S1_at11/111+24609589..24612154expressed protein
LOC_Os01g42710Os.1021.1.S1_at9/111+24619385..24626543LSD1 zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23638.1.S1_at--135--7272Chr05:7804562..7804581 (20 bp)
GTCCATCTAATACATACTACCTCCG
NONE
OsAffx.23638.1.S1_at--823--4311Chr01:24596672..24596696 (25 bp)
CCATCTAATACATACTACCTCCGTT
LOC_Os01g42670
OsAffx.23638.1.S1_at--726--6811NONE
GTTTCACAATGAATTCAGCGCACCC
NONE
OsAffx.23638.1.S1_at--1116--4091Chr01:24598468..24598492 (25 bp)
CGCAAGCGCGAATAGGACTTGTAAT
LOC_Os01g42670
OsAffx.23638.1.S1_at--324--1631Chr01:24598472..24598493 (22 bp)
AGCGCGAATAGGACTTGTAATGTGC
LOC_Os01g42670
OsAffx.23638.1.S1_at--684--10091NONE
TAGGACTTGTAATGTGCGAGATGAT
NONE
OsAffx.23638.1.S1_at--917--4611Chr01:24599162..24599186 (25 bp)
GCGAGATGATGAACCAGGGAACCGT
LOC_Os01g42670
OsAffx.23638.1.S1_at--375--8851Chr01:24599168..24599192 (25 bp)
TGATGAACCAGGGAACCGTACCTAA
LOC_Os01g42670
OsAffx.23638.1.S1_at--1065--3311Chr01:24599176..24599200 (25 bp)
CAGGGAACCGTACCTAACGACACAG
LOC_Os01g42670
OsAffx.23638.1.S1_at--382--5431Chr01:24599180..24599204 (25 bp)
GAACCGTACCTAACGACACAGGCAA
LOC_Os01g42670
OsAffx.23638.1.S1_at--82--6991Chr01:24599185..24599209 (25 bp)
GTACCTAACGACACAGGCAATCAGA
LOC_Os01g42670
Target Sequence 
GTCCATCTAATACATACTACCTCCGTTTCACAATGAATTCAGCGCACCCAGGCACGGAGTTACCGCAAGCGCGAATAGGA
CTTGTAATGTGCGAGATGATGAACCAGGGAACCGTACCTAACGACACAGGCAATCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis