Browse Element(s) Details


OsAffx.2376.1.S1_x_at

Description tigr:9630.m04078
TID=OsAffx.2376.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=serine-rich protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4256011/11expressed protein
LOC_Os01g608701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42488OsAffx.24690.1.S1_at11/112+25553858..25554435hypothetical protein
LOC_Os02g42497OsAffx.24689.1.S1_at11/112+25555953..25556814hypothetical protein
LOC_Os02g42506OsAffx.24690.1.S1_at11/112+25558141..25558718hypothetical protein
LOC_Os02g42520Os.26726.1.S1_a_at11/112+25559996..25563167oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os02g42530Os.23549.1.S1_a_at11/112+25563305..25569039expressed protein
LOC_Os02g42530OsAffx.9386.1.S1_x_at1/112+25563305..25569039expressed protein
LOC_Os02g42540Os.29053.1.S1_at11/112+25571012..25573292expressed protein
LOC_Os02g42550Os.54384.1.S1_at11/112+25573586..25576214expressed protein
LOC_Os02g42560OsAffx.2376.1.S1_at11/112+25577602..25579828expressed protein
LOC_Os02g42560OsAffx.2376.1.S1_x_at11/112+25577602..25579828expressed protein
LOC_Os02g42570Os.27686.1.S1_at11/112+25584058..25584932Ferredoxin-thioredoxin reductase, variable chain, putative, expressed
LOC_Os02g42580Os.51093.1.S1_at11/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42580OsAffx.2943.1.S1_x_at7/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42580OsAffx.2943.1.S1_at1/112+25586133..25589230BRO1-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2376.1.S1_x_at--803--4651Chr02:25578472..25578496 (25 bp)
GCGTGCGTCTCCAAGGCGTGCTCCA
LOC_Os02g42560
OsAffx.2376.1.S1_x_at--935--3951Chr02:25578324..25578348 (25 bp)
CGGAGCCGGGCGTGCACAAGAGGCA
LOC_Os02g42560
OsAffx.2376.1.S1_x_at--85--6091Chr02:25578244..25578268 (25 bp)
GAGTCCGCCGGGAGCAACAGCGTCT
LOC_Os02g42560
OsAffx.2376.1.S1_x_at--858--8531Chr02:25578208..25578232 (25 bp)
TGGACGCCGTCGTGGGAGCCCAACT
LOC_Os02g42560
OsAffx.2376.1.S1_x_at--739--5871Chr02:25578193..25578217 (25 bp)
GAGCCCAACTCGGTGGAGTCCACGG
LOC_Os02g42560
OsAffx.2376.1.S1_x_at--960--4795Chr08:17025136..17025160 (25 bp)
GCTCGACGAACAACGGCGACGAGGT
NONE
OsAffx.2376.1.S1_x_at--238--4491Chr02:25578013..25578037 (25 bp)
GCCGGCAGCTCTGGTGGTAACAGCA
LOC_Os02g42560
OsAffx.2376.1.S1_x_at--206--5071Chr02:25578009..25578033 (25 bp)
GCAGCTCTGGTGGTAACAGCAACAA
LOC_Os02g42560
OsAffx.2376.1.S1_x_at--118--2151Chr02:25577994..25578018 (25 bp)
ACAGCAACAACGTCGTTCATCGTGG
LOC_Os02g42560
OsAffx.2376.1.S1_x_at--543--2451Chr02:25577989..25578013 (25 bp)
AACAACGTCGTTCATCGTGGACGCG
LOC_Os02g42560
OsAffx.2376.1.S1_x_at--59--511Chr02:25577976..25578000 (25 bp)
ATCGTGGACGCGGTGCTCATCGCAG
LOC_Os02g42560
Target Sequence 
GCGTGCGTCTCCAAGGCGTGCTCCATCCTCGACGCCGTGGCCGACCTCAACTCCTCGTCGTCGGACAGCCACTCCTGCGA
GCCCGACCGCTCCGCCAACGACAGGGGATCGGTCAACGCGCCGCTCGGCGGCGGCATGGACGACCTCGCGGAGCCGGGCG
TGCACAAGAGGCACGCCACCGCCCCACGGGGGGACATCCGCGGCGGCGGCGGCGAGACCGAGCCGCAGGAGTCCGCCGGG
AGCAACAGCGTCTCCGGCAACCCGTGGACGCCGTCGTGGGAGCCCAACTCGGTGGAGTCCACGGACCGGACGTGGAGCGC
GTCGCGCTCGACGAACAACGGCGACGAGGTGGTCGAGCAGGGCAGCAGCAGCCACGCCGGCGCGCGCAGCCCGCTGAACC
GCTCCCGGCAGAGCAGCAAGCAGAGGGCGGCGCAGCCGGAGCACAGCGTCCGGTCGCGCGCCGGCAGCTCTGGTGGTAAC
AGCAACAACGTCGTTCATCGTGGACGCGGTGCTCATCGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2376.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis