Browse Element(s) Details


OsAffx.23787.2.S1_x_at

Description tigr:9629.m05300
TID=OsAffx.23787.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g543603/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54310OsAffx.9446.1.S1_at11/111+31582626..31582931hypothetical protein
LOC_Os01g54320OsAffx.23786.1.S1_at10/111+31589851..31590054hypothetical protein
LOC_Os01g54330OsAffx.11600.1.S1_at10/111+31593548..31595101hypothetical protein
LOC_Os01g54340Os.40424.1.S1_at11/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54340Os.12793.1.S1_x_at10/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54350Os.2128.1.S1_at11/111+31602090..31606233protein kinase, putative, expressed
LOC_Os01g54360OsAffx.23787.2.S1_x_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.1.S1_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.2.S1_at2/111+31607700..31610060hypothetical protein
LOC_Os01g54370Os.2131.1.S1_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54370Os.2131.1.S1_s_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54380Os.2132.1.S1_s_at11/111+31613517..31614882pentatricopeptide, putative, expressed
LOC_Os01g54390Os.33221.1.S1_at11/111+31615018..31619643S4 domain containing protein, expressed
LOC_Os01g54390Os.33221.2.S1_x_at11/111+31615018..31619643S4 domain containing protein, expressed
LOC_Os01g54400Os.2135.1.S1_at11/111+31625790..31627032VQ motif family protein, expressed
LOC_Os01g54410OsAffx.11602.1.S1_at11/111+31629606..31629885hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23787.2.S1_x_at--772--5791Chr01:31609985..31610009 (25 bp)
GACGCCAAGGGCAGTGTCACCTTCA
LOC_Os01g54360
OsAffx.23787.2.S1_x_at--10--7671NONE
GGGATGAGATCCTCCATCTGGAACA
NONE
OsAffx.23787.2.S1_x_at--535--7991NONE
GGATGAGATCCTCCATCTGGAACAC
NONE
OsAffx.23787.2.S1_x_at--239--6311NONE
GATGAGATCCTCCATCTGGAACACG
NONE
OsAffx.23787.2.S1_x_at--1038--691NONE
ATGAGATCCTCCATCTGGAACACGA
NONE
OsAffx.23787.2.S1_x_at--696--8891NONE
TGAGATCCTCCATCTGGAACACGAG
NONE
OsAffx.23787.2.S1_x_at--665--6031NONE
GAGATCCTCCATCTGGAACACGAGT
NONE
OsAffx.23787.2.S1_x_at--297--1291NONE
AGATCCTCCATCTGGAACACGAGTT
NONE
OsAffx.23787.2.S1_x_at--633--6371NONE
GATCCTCCATCTGGAACACGAGTTC
NONE
OsAffx.23787.2.S1_x_at--1021--2531Chr01:31608374..31608398 (25 bp)
AACTCCACGCGACCAAGATGGAGGA
LOC_Os01g54360
OsAffx.23787.2.S1_x_at--409--9091Chr01:31608347..31608371 (25 bp)
TGCTCCGTCAGGTGGCCACGGCAGT
LOC_Os01g54360
Target Sequence 
GACGCCAAGGGCAGTGTCACCTTCAACGCCGTCGTCGGGGTCCGGGAGGCGGACGCCGCCGGGGATGAGATCCTCCATCT
GGAACACGAGTTCCACCAACTCCACGCGACCAAGATGGAGGAGCTGCTCCGTCAGGTGGCCACGGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23787.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis