Browse Element(s) Details


OsAffx.23804.1.S1_at

Description gb:NM_191383.1
DB_XREF= gi:34909849
GEN=OSJNBb0053G03.6
TID=OsAffx.23804.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0053G03.6 (OSJNBb0053G03.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5611011/11RNA-binding protein Musashi homolog 2, putative
LOC_Os01g561201/11RNA recognition motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56080OsAffx.11619.1.S1_at11/111+32615995..32616652expressed protein
LOC_Os01g56090Os.33926.1.S1_at11/111+32620672..32622090expressed protein
LOC_Os01g56100Os.12255.1.S1_a_at11/111+32625741..32629883BSD domain containing protein, expressed
LOC_Os01g56110OsAffx.23804.1.S1_at11/111+32630547..32633485RNA-binding protein Musashi homolog 2, putative
LOC_Os01g56110OsAffx.23804.2.S1_s_at1/111+32630547..32633485RNA-binding protein Musashi homolog 2, putative
LOC_Os01g56120OsAffx.23804.2.S1_s_at11/111+32635655..32640042RNA recognition motif family protein
LOC_Os01g56120OsAffx.23804.3.S1_at9/111+32635655..32640042RNA recognition motif family protein
LOC_Os01g56120OsAffx.23804.1.S1_at1/111+32635655..32640042RNA recognition motif family protein
LOC_Os01g56130Os.29016.1.S1_at11/111+32645461..32649521glycosyl transferase family 2 protein, putative, expressed
LOC_Os01g56130Os.14210.1.S1_at1/111+32645461..32649521glycosyl transferase family 2 protein, putative, expressed
LOC_Os01g56140Os.26362.1.S1_at11/111+32654651..32659625expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23804.1.S1_at--225--3312Chr01:32638048..32638072 (25 bp)
CACAACTCAGTCCAGGTGACCAGAA
LOC_Os01g56120
OsAffx.23804.1.S1_at--227--7451Chr01:32632943..32632967 (25 bp)
GTGTCCGCCACCGAAAAGAAGCTCA
LOC_Os01g56110
OsAffx.23804.1.S1_at--264--2191Chr01:32632980..32633004 (25 bp)
ACAAATTCGGCGAGGTCAATCGGGC
LOC_Os01g56110
OsAffx.23804.1.S1_at--79--5651Chr01:32633278..32633302 (25 bp)
GACACCTATGAACTGCGTCATCAGC
LOC_Os01g56110
OsAffx.23804.1.S1_at--341--391Chr01:32633297..32633321 (25 bp)
ATCAGCAATGCTTTTAACCCTCATA
LOC_Os01g56110
OsAffx.23804.1.S1_at--666--231Chr01:32633319..32633343 (25 bp)
ATATCGGCTTTGAGGTACCCGGGAT
LOC_Os01g56110
OsAffx.23804.1.S1_at--111--7851Chr01:32633332..32633356 (25 bp)
GGTACCCGGGATGATACTTAGTGAT
LOC_Os01g56110
OsAffx.23804.1.S1_at--924--8871Chr01:32633353..32633377 (25 bp)
TGATGGTGTGAGCAATTCTGTCAGT
LOC_Os01g56110
OsAffx.23804.1.S1_at--182--112Chr01:32633367..32633391 (25 bp)
ATTCTGTCAGTGCTAATTACTCCTA
LOC_Os01g56110
OsAffx.23804.1.S1_at--807--9951Chr01:32633390..32633414 (25 bp)
TACCAGAACCCCTACTTGGGAGGTG
LOC_Os01g56110
OsAffx.23804.1.S1_at--803--7491Chr01:32633412..32633436 (25 bp)
GTGGTGGTGTTCAGCCTCAAGGCTC
LOC_Os01g56110
Target Sequence 
CACAACTCAGTCCAGGTGACCAGAAGAGGAAGATTTTCGTTGGCGGCTTGCCGGTGTCCGCCACCGAAAAGAAGCTCAAA
GAATACTTCAACAAATTCGGCGAGGTCAATCGGGCAATCGTGGTCATCGACCTTAACACGAAGATGCCCAGGGGGTTCGG
CTTCATCCAGTTCGCATCGGAGGAGTCCACAGCGAGGGCGCTCAAGAAGGACAAACACTTCCTCTGTGGCCAGTGGGTGG
AGGTGAGCCTTGCAATGCCCAAGCAGCAGAATGCAGCTTCTGGCACTAGCAAATTGTCAGTTCAGGCTCGCCCGTTTTAT
CCGACGACATCATCAAACTTCACAACCGCCGCTAATTATCCTGACGTCGTTAATATTGTCCCTATGGTGACACCTATGAA
CTGCGTCATCAGCAATGCTTTTAACCCTCATATCGGCTTTGAGGTACCCGGGATGATACTTAGTGATGGTGTGAGCAATT
CTGTCAGTGCTAATTACTCCTACCAGAACCCCTACTTGGGAGGTGGTGGTGTTCAGCCTCAAGGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23804.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis