Browse Element(s) Details


OsAffx.23806.1.S1_x_at

Description tigr:9629.m05500
TID=OsAffx.23806.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY098946 At1g31300T19E23_12
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5623011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56190Os.22836.3.S1_x_at11/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56190Os.22836.2.S1_x_at9/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56190Os.22836.2.S1_at5/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56200Os.15117.1.S1_at11/111+32694609..32698662Regulatory protein NPR1, putative, expressed
LOC_Os01g56210OsAffx.23805.1.S1_at11/111+32698830..32699717expressed protein
LOC_Os01g56220Os.9154.1.S1_at11/111+32706608..32707430expressed protein
LOC_Os01g56230OsAffx.23806.1.S1_x_at11/111+32708058..32712542expressed protein
LOC_Os01g56230Os.25486.1.S1_at11/111+32708058..32712542expressed protein
LOC_Os01g56240OsAffx.23807.1.S1_x_at11/111+32717215..32717645Auxin responsive protein, expressed
LOC_Os01g56250OsAffx.29313.1.S1_at1/111+32720238..32722846hypothetical protein
LOC_Os01g56260Os.42032.1.S1_at10/111+32723284..32727004expressed protein
LOC_Os01g56270Os.49365.1.S1_at11/111+32735130..32740445transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23806.1.S1_x_at--844--771Chr01:32709704..32709728 (25 bp)
ATGTCCACTGTCCATGCAATGTTTA
LOC_Os01g56230
OsAffx.23806.1.S1_x_at--61--10351Chr01:32709664..32709688 (25 bp)
TTTACCTAGTATTCTTCTCCAACCT
LOC_Os01g56230
OsAffx.23806.1.S1_x_at--722--111Chr01:32709639..32709663 (25 bp)
ATTCTCTGATGAGCTGGATGGCCCA
LOC_Os01g56230
OsAffx.23806.1.S1_x_at--342--6231Chr01:32709623..32709647 (25 bp)
GATGGCCCAGTAACAGTTCGGAGTT
LOC_Os01g56230
OsAffx.23806.1.S1_x_at--495--6071Chr01:32709603..32709627 (25 bp)
GAGTTCAAACCTCTCCAATTTTACA
LOC_Os01g56230
OsAffx.23806.1.S1_x_at--958--1731Chr01:32709449..32709473 (25 bp)
ACCTTGCTATGTTATCCTGGGCTTA
LOC_Os01g56230
OsAffx.23806.1.S1_x_at--868--831Chr01:32709268..32709432 (25 bp)
ATGGAGTATGTTCTTCACCACTTGC
LOC_Os01g56230
OsAffx.23806.1.S1_x_at--870--1751Chr01:32709058..32709171 (25 bp)
ACCTCCGATGGTTTCTTGATACTGT
LOC_Os01g56230
OsAffx.23806.1.S1_x_at--331--8351Chr01:32708529..32708549 (21 bp)
GGCTGGTTAAGCAGATGCGCACCTT
LOC_Os01g56230
OsAffx.23806.1.S1_x_at--946--4111Chr01:32708512..32708536 (25 bp)
CGCACCTTTAGCTGCATTCTGATAT
LOC_Os01g56230
OsAffx.23806.1.S1_x_at--1039--10591Chr01:32708496..32708520 (25 bp)
TTCTGATATTCGCTGTGCCCACAAT
LOC_Os01g56230
Target Sequence 
ATGTCCACTGTCCATGCAATGTTTATCACATTAATGTCAGTTTACCTAGTATTCTTCTCCAACCTATTCTCTGATGAGCT
GGATGGCCCAGTAACAGTTCGGAGTTCAAACCTCTCCAATTTTACACTGGGGGTTTCTCTGGGGTACTTCATCGCTGACC
TTGCTATGTTATCCTGGGCTTATCCTTCCCTTGGCGGAATGGAGTATGTTCTTCACCACTTGCTGTCAATTATTTCTTTA
GTCTATGCTATTTATTCTGAAGAAGGACAGTTGTACACATACATGGTTCTCATCTCTGAAACAACCACACCTGGAATCAA
CCTCCGATGGTTTCTTGATACTGTTGGAATGAAAAGATCGAAAGCCTATCTTGTCAATGGTGTTACAATGTTTGTTGCAT
GGCTGGTTAAGCAGATGCGCACCTTTAGCTGCATTCTGATATTCGCTGTGCCCACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23806.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis