Browse Element(s) Details


OsAffx.23807.1.S1_x_at

Description gb:NM_191397.1
DB_XREF= gi:34909877
GEN=B1143G03.3
TID=OsAffx.23807.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1143G03.3 (B1143G03.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5624011/11Auxin responsive protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56200Os.15117.1.S1_at11/111+32694609..32698662Regulatory protein NPR1, putative, expressed
LOC_Os01g56210OsAffx.23805.1.S1_at11/111+32698830..32699717expressed protein
LOC_Os01g56220Os.9154.1.S1_at11/111+32706608..32707430expressed protein
LOC_Os01g56230OsAffx.23806.1.S1_x_at11/111+32708058..32712542expressed protein
LOC_Os01g56230Os.25486.1.S1_at11/111+32708058..32712542expressed protein
LOC_Os01g56240OsAffx.23807.1.S1_x_at11/111+32717215..32717645Auxin responsive protein, expressed
LOC_Os01g56250OsAffx.29313.1.S1_at1/111+32720238..32722846hypothetical protein
LOC_Os01g56260Os.42032.1.S1_at10/111+32723284..32727004expressed protein
LOC_Os01g56270Os.49365.1.S1_at11/111+32735130..32740445transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g56280Os.14919.1.S1_at1/111+32741923..32744159hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23807.1.S1_x_at--653--9991Chr01:32717244..32717268 (25 bp)
TAGCTGAGATGAAGGCCGGGTACGT
LOC_Os01g56240
OsAffx.23807.1.S1_x_at--396--9931Chr01:32717264..32717288 (25 bp)
TACGTGCCGGTGCTGGTCGGGAAGA
LOC_Os01g56240
OsAffx.23807.1.S1_x_at--267--7591Chr01:32717336..32717360 (25 bp)
GGGCTACTGAACGACCCGTGCATGG
LOC_Os01g56240
OsAffx.23807.1.S1_x_at--219--4851Chr01:32717338..32717362 (25 bp)
GCTACTGAACGACCCGTGCATGGAG
LOC_Os01g56240
OsAffx.23807.1.S1_x_at--406--1951Chr01:32717341..32717365 (25 bp)
ACTGAACGACCCGTGCATGGAGGCG
LOC_Os01g56240
OsAffx.23807.1.S1_x_at--853--8971Chr01:32717343..32717367 (25 bp)
TGAACGACCCGTGCATGGAGGCGCT
LOC_Os01g56240
OsAffx.23807.1.S1_x_at--398--1871Chr01:32717346..32717370 (25 bp)
ACGACCCGTGCATGGAGGCGCTGCT
LOC_Os01g56240
OsAffx.23807.1.S1_x_at--767--7591Chr01:32717399..32717423 (25 bp)
GGGCAGGAGGGCGTCCTCATCATCC
LOC_Os01g56240
OsAffx.23807.1.S1_x_at--1149--5671Chr01:32717435..32717459 (25 bp)
GACTTCTTCCGCAGGGTCGTCACGG
LOC_Os01g56240
OsAffx.23807.1.S1_x_at--610--9571Chr01:32717439..32717463 (25 bp)
TCTTCCGCAGGGTCGTCACGGCCAT
LOC_Os01g56240
OsAffx.23807.1.S1_x_at--374--4011Chr01:32717466..32717490 (25 bp)
CGTCGGCCAACAAGGCGAACCTCAT
LOC_Os01g56240
Target Sequence 
TAGCTGAGATGAAGGCCGGGTACGTGCCGGTGCTGGTCGGGAAGAGCGGCGGCGGCGGCGGCGAGGCGGCGACGAGGTTT
CTTGTGCCGGTGGGGCTACTGAACGACCCGTGCATGGAGGCGCTGCTGGAGCTCGCCGCCGACGAGATGGGGTACGGGCA
GGAGGGCGTCCTCATCATCCCCTGCGACGCCGACTTCTTCCGCAGGGTCGTCACGGCCATCCCGTCGGCCAACAAGGCGA
ACCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23807.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis