Browse Element(s) Details


OsAffx.23841.1.S1_at

Description tigr:9629.m05739
TID=OsAffx.23841.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5849011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58450OsAffx.9495.1.S1_at10/111+34115539..34116995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58450OsAffx.21754.1.S1_x_at2/111+34115539..34116995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58459Os.7853.1.S1_at11/111+34117138..34120938expressed protein
LOC_Os01g58459Os.7853.1.S2_a_at11/111+34117138..34120938expressed protein
LOC_Os01g58459Os.7853.2.S1_x_at10/111+34117138..34120938expressed protein
LOC_Os01g58459Os.51796.1.S1_at7/111+34117138..34120938expressed protein
LOC_Os01g58470Os.27717.1.S1_a_at11/111+34130010..34132240expressed protein
LOC_Os01g58480OsAffx.23840.1.S1_at11/111+34136537..34137863hypothetical protein
LOC_Os01g58490OsAffx.23841.1.S1_at11/111+34138781..34139359hypothetical protein
LOC_Os01g58500Os.36178.1.S1_at10/111+34139763..34141975expressed protein
LOC_Os01g58510OsAffx.23842.1.S1_at11/111+34142253..34143446NB-ARC domain containing protein, expressed
LOC_Os01g58510OsAffx.23842.3.S1_x_at1/111+34142253..34143446NB-ARC domain containing protein, expressed
LOC_Os01g58520Os.25235.1.A1_at11/111+34143539..34145585Leucine Rich Repeat family protein, expressed
LOC_Os01g58530Os.26785.2.S1_at11/111+34152430..34155661Leucine Rich Repeat family protein, expressed
LOC_Os01g58530Os.26785.1.A1_at11/111+34152430..34155661Leucine Rich Repeat family protein, expressed
LOC_Os01g58540OsAffx.21684.1.S1_at11/111+34159008..34159987hypothetical protein
LOC_Os01g58550Os.42285.1.S1_x_at11/111+34164236..34167815methyladenine glycosylase family protein, putative, expressed
LOC_Os01g58550Os.57355.1.S1_x_at11/111+34164236..34167815methyladenine glycosylase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23841.1.S1_at--702--10511Chr01:34139296..34139320 (25 bp)
TTCACATGCGGCACTCTGTTCATGT
LOC_Os01g58490
OsAffx.23841.1.S1_at--749--3871Chr01:34139281..34139305 (25 bp)
CTGTTCATGTGCCTCAATCTACGGG
LOC_Os01g58490
OsAffx.23841.1.S1_at--688--4511Chr01:34139170..34139194 (25 bp)
GCCGAGACAGAGCAAGAGCCCCAGT
LOC_Os01g58490
OsAffx.23841.1.S1_at--592--1471Chr01:34139160..34139184 (25 bp)
AGCAAGAGCCCCAGTACGTGCCGGC
LOC_Os01g58490
OsAffx.23841.1.S1_at--547--7551Chr01:34139121..34139145 (25 bp)
GGGCCGCGTCCTTCGAGAAGCTCGA
LOC_Os01g58490
OsAffx.23841.1.S1_at--209--3691Chr01:34139084..34139108 (25 bp)
CTATTCGGGCAGCAACATCGCCTTC
LOC_Os01g58490
OsAffx.23841.1.S1_at--688--4551Chr01:34139022..34139046 (25 bp)
GCGCCCGGCAGGTCCTTGCGTACTG
LOC_Os01g58490
OsAffx.23841.1.S1_at--1039--9411Chr01:34138917..34138941 (25 bp)
TCGTGCTCGATGGATGCCCGACGAA
LOC_Os01g58490
OsAffx.23841.1.S1_at--557--6351Chr01:34138905..34138929 (25 bp)
GATGCCCGACGAAGGGCGCCCTGAA
LOC_Os01g58490
OsAffx.23841.1.S1_at--1133--4211Chr01:34138822..34138846 (25 bp)
CCGCATCTCGTCAGGTTCTTGTCGA
LOC_Os01g58490
OsAffx.23841.1.S1_at--379--3471Chr01:34138811..34138835 (25 bp)
CAGGTTCTTGTCGACGTCGGGTTCT
LOC_Os01g58490
Target Sequence 
TTCACATGCGGCACTCTGTTCATGTGCCTCAATCTACGGGGCCTCTTCAAGAAGAAGCCAGAAGAGGTTGGCAAGAGCCG
GCGGCAAAGCCAAGAACAAGATCAAGACCAAGCCGCCGCAGTCGATGCCGAGACAGAGCAAGAGCCCCAGTACGTGCCGG
CGCCGGCGCCAATCCGGGCCGCGTCCTTCGAGAAGCTCGAGCGCTCCCCGCCCTATTCGGGCAGCAACATCGCCTTCGAC
CTCCTCGTGGAGCCGGAGCTAGGGGAGGACCGCGGCGCCCGGCAGGTCCTTGCGTACTGCCCGTCGCCGTGCTTCGACCT
GCCGGCGGGGCTCATGATGAGGGCCGGCGAACGGTGCGACGCGCCTGGCACGGCGGGGTTCGTGCTCGATGGATGCCCGA
CGAAGGGCGCCCTGAAGAAGGTGGCGTCGTGCCTGCCGCCCGACGTCGCGGGCGGCGACGGCGAGGCGCGGCCGCCGCAT
CTCGTCAGGTTCTTGTCGACGTCGGGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23841.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis