Browse Element(s) Details


OsAffx.23961.1.S1_s_at

Description tigr:9629.m06725
TID=OsAffx.23961.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GRAS family transcription factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6765011/11GRAS family transcription factor containing protein, expressed
LOC_Os01g6767011/11GRAS family transcription factor containing protein
LOC_Os04g098801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67590Os.14090.1.S1_a_at11/111+39616212..39623444Peptidase family M3 containing protein, expressed
LOC_Os01g67600OsAffx.23960.1.S1_s_at11/111+39623837..39626634esterase, putative, expressed
LOC_Os01g67600Os.48005.1.S1_x_at11/111+39623837..39626634esterase, putative, expressed
LOC_Os01g67610OsAffx.11775.1.S1_at11/111+39629006..39630045hypothetical protein
LOC_Os01g67610OsAffx.11775.2.S1_at10/111+39629006..39630045hypothetical protein
LOC_Os01g67610OsAffx.11775.1.S1_x_at10/111+39629006..39630045hypothetical protein
LOC_Os01g67620OsAffx.13122.2.S1_at10/111+39632362..39633060hypothetical protein
LOC_Os01g67620OsAffx.22604.1.S1_x_at1/111+39632362..39633060hypothetical protein
LOC_Os01g67630OsAffx.21788.1.S1_at11/111+39634312..39637150POT family protein, expressed
LOC_Os01g67630OsAffx.21788.1.S1_x_at11/111+39634312..39637150POT family protein, expressed
LOC_Os01g67630OsAffx.21788.2.S1_x_at2/111+39634312..39637150POT family protein, expressed
LOC_Os01g67640OsAffx.21788.2.S1_x_at11/111+39639579..39642540POT family protein, expressed
LOC_Os01g67640OsAffx.21788.1.S1_x_at1/111+39639579..39642540POT family protein, expressed
LOC_Os01g67640OsAffx.24785.1.S1_x_at1/111+39639579..39642540POT family protein, expressed
LOC_Os01g67650OsAffx.23961.1.S1_s_at11/111+39646238..39647836GRAS family transcription factor containing protein, expressed
LOC_Os01g67650OsAffx.23961.2.S1_s_at8/111+39646238..39647836GRAS family transcription factor containing protein, expressed
LOC_Os01g67660OsAffx.9591.1.S1_x_at11/111+39648542..39650049hypothetical protein
LOC_Os01g67660OsAffx.9591.1.S1_at11/111+39648542..39650049hypothetical protein
LOC_Os01g67660OsAffx.21787.3.S1_at10/111+39648542..39650049hypothetical protein
LOC_Os01g67670OsAffx.23961.1.S1_s_at11/111+39651207..39652299GRAS family transcription factor containing protein
LOC_Os01g67670OsAffx.23961.2.S1_s_at11/111+39651207..39652299GRAS family transcription factor containing protein
LOC_Os01g67680OsAffx.21787.3.S1_at3/111+39655654..39656466hypothetical protein
LOC_Os01g67690NANA1+39663660..39668006retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g67700OsAffx.23962.1.S1_at11/111+39672282..39672935hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006808biological_processregulation of nitrogen utilization
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0010187biological_processnegative regulation of seed germination
GO:0010233biological_processphloem transport
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23961.1.S1_s_at--1058--6772Chr01:39647236..39647260 (25 bp)
GTTAGGGATGTACCTCGAGTTCAGA
LOC_Os01g67650
OsAffx.23961.1.S1_s_at--902--7232Chr01:39647324..39647348 (25 bp)
GTCGCCATCAACAGTGTCCTGGAGC
LOC_Os01g67650
OsAffx.23961.1.S1_s_at--761--3552Chr01:39647329..39647353 (25 bp)
CATCAACAGTGTCCTGGAGCTCCAC
LOC_Os01g67650
OsAffx.23961.1.S1_s_at--196--5913Chr04:5292319..5292717 (25 bp)
GAGCTCCACTCCGTGGTGAAGGAGA
LOC_Os04g09880
OsAffx.23961.1.S1_s_at--346--552Chr01:39647402..39647426 (25 bp)
ATCCGCAAGCTGTCGCCCAGGGCGT
LOC_Os01g67650
OsAffx.23961.1.S1_s_at--779--4152Chr01:39647415..39647439 (25 bp)
CGCCCAGGGCGTTCGTGCTCGTCGA
LOC_Os01g67650
OsAffx.23961.1.S1_s_at--203--10672Chr01:39647468..39647492 (25 bp)
TTCCTCGGCCGGTTCATGGAGGCGC
LOC_Os01g67650
OsAffx.23961.1.S1_s_at--418--7572Chr01:39647556..39647580 (25 bp)
GGGCGCGCGTCGAGCAGTTCCACTT
LOC_Os01g67650
OsAffx.23961.1.S1_s_at--228--1532Chr01:39647568..39647592 (25 bp)
AGCAGTTCCACTTCGGCGCGGAGAT
LOC_Os01g67650
OsAffx.23961.1.S1_s_at--1070--2032Chr01:39647577..39647601 (25 bp)
ACTTCGGCGCGGAGATCCGCAACGT
LOC_Os01g67650
OsAffx.23961.1.S1_s_at--432--6692Chr01:39647680..39647704 (25 bp)
GTTCCAGTCGGTGCCGATCAAGATG
LOC_Os01g67650
Target Sequence 
GTTAGGGATGTACCTCGAGTTCAGAGGCATCAACCGTGGCCTCGAGAGCCTCCACATCGACGACCTCGGCGTCGACGCCG
ACGAGGCCGTCGCCATCAACAGTGTCCTGGAGCTCCACTCCGTGGTGAAGGAGAGCCGCGGGGCGCTCAACTCGGTGCTC
CAGACCATCCGCAAGCTGTCGCCCAGGGCGTTCGTGCTCGTCGAGCAGGACGCCGGCCACAACGGGCCATTCTTCCTCGG
CCGGTTCATGGAGGCGCTGCACTACTACGCCGCGCTGTTCGACGCGCTCGACGCGGCGCTCCCGCGCTACGACGCGCGGC
GGGCGCGCGTCGAGCAGTTCCACTTCGGCGCGGAGATCCGCAACGTGGTCGGGTGCGAGGGCGCGGCGCGCGTGGAGCGG
CACGAGCGCGCCGACCAGTGGCGCCGCCGCATGAGCCGCGCGGGGTTCCAGTCGGTGCCGATCAAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23961.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis