Browse Element(s) Details


OsAffx.23973.1.S1_x_at

Description tigr:9629.m06819
TID=OsAffx.23973.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6864011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68580Os.27932.1.S1_at9/111+40163505..40164101Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68589Os.7317.2.S1_at11/111+40166470..40167291Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68598Os.51597.1.S1_at11/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.7296.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.23972.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68610Os.32106.1.S1_at11/111+40176494..40178262pentatricopeptide, putative, expressed
LOC_Os01g68620Os.35017.1.S1_at11/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_x_at9/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_at1/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68630Os.19016.1.S1_at11/111+40184653..40188131expressed protein
LOC_Os01g68640OsAffx.23973.1.S1_x_at11/111+40189019..40189885expressed protein
LOC_Os01g68640OsAffx.23973.1.S1_at11/111+40189019..40189885expressed protein
LOC_Os01g68650Os.27232.1.S1_at11/111+40193187..40194309uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g68660Os.42764.1.S1_at10/111+40203307..40204092Cystatin domain containing protein, expressed
LOC_Os01g68670NANA1+40205808..40206254cystatin, putative, expressed
LOC_Os01g68680OsAffx.2439.1.S1_at11/111+40207864..40217477TPR Domain containing protein, expressed
LOC_Os01g68680Os.45968.1.S1_at10/111+40207864..40217477TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23973.1.S1_x_at--530--4211Chr01:40189075..40189099 (25 bp)
CCGCGTCCGGGAAGCCATCGTCGGA
LOC_Os01g68640
OsAffx.23973.1.S1_x_at--772--7691Chr01:40189104..40189128 (25 bp)
GGGTAACTCAATGCGACATAGGTAG
LOC_Os01g68640
OsAffx.23973.1.S1_x_at--1126--7031Chr01:40189106..40189130 (25 bp)
GTAACTCAATGCGACATAGGTAGAT
LOC_Os01g68640
OsAffx.23973.1.S1_x_at--900--3731Chr01:40189110..40189134 (25 bp)
CTCAATGCGACATAGGTAGATCTGC
LOC_Os01g68640
OsAffx.23973.1.S1_x_at--982--5651Chr01:40189118..40189142 (25 bp)
GACATAGGTAGATCTGCAGGCGCCG
LOC_Os01g68640
OsAffx.23973.1.S1_x_at--429--2091Chr01:40189119..40189143 (25 bp)
ACATAGGTAGATCTGCAGGCGCCGT
LOC_Os01g68640
OsAffx.23973.1.S1_x_at--615--271Chr01:40189121..40189145 (25 bp)
ATAGGTAGATCTGCAGGCGCCGTGC
LOC_Os01g68640
OsAffx.23973.1.S1_x_at--932--9471Chr01:40189130..40189154 (25 bp)
TCTGCAGGCGCCGTGCTGGGACTAC
LOC_Os01g68640
OsAffx.23973.1.S1_x_at--27--4571Chr01:40189137..40189161 (25 bp)
GCGCCGTGCTGGGACTACGAGGAGA
LOC_Os01g68640
OsAffx.23973.1.S1_x_at--346--4691Chr01:40189144..40189168 (25 bp)
GCTGGGACTACGAGGAGACGGCCGC
LOC_Os01g68640
OsAffx.23973.1.S1_x_at--1085--7611Chr01:40189199..40189223 (25 bp)
GGGAACCTGCTCTACGTCTTCTCCA
LOC_Os01g68640
Target Sequence 
CCGCGTCCGGGAAGCCATCGTCGGAGGGGGGGTAACTCAATGCGACATAGGTAGATCTGCAGGCGCCGTGCTGGGACTAC
GAGGAGACGGCCGCGGCGGCGGCCACCTTTGCCCCGCCTCGACGGGGAACCTGCTCTACGTCTTCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23973.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis