Browse Element(s) Details


OsAffx.23997.1.S1_at

Description tigr:9629.m07036
TID=OsAffx.23997.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7118011/11PPR986-12, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71114Os.34865.1.S1_s_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.34865.3.S1_x_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114OsAffx.23995.1.S1_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.34865.2.S1_x_at6/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.50617.1.S2_x_at1/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71130Os.30331.1.S1_at11/111+41493084..41494751xylanase inhibitor TAXI-III, putative, expressed
LOC_Os01g71140Os.36248.1.S1_at11/111+41496376..41497851xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71150OsAffx.26553.2.S1_at1/111+41499243..41499803hypothetical protein
LOC_Os01g71160OsAffx.23996.1.S1_at11/111+41503240..41504544xylanase inhibitor precursor, putative, expressed
LOC_Os01g71170OsAffx.11813.1.S1_at11/111+41506282..41507216expressed protein
LOC_Os01g71180OsAffx.23997.1.S1_at11/111+41510649..41513399PPR986-12, putative
LOC_Os01g71190Os.25590.1.S1_at11/111+41513875..41515630Photosystem II reaction center W protein, putative, expressed
LOC_Os01g71200Os.33686.1.S1_at11/111+41520199..41525752Ribonucleoprotein, putative, expressed
LOC_Os01g71210Os.51276.1.S1_x_at11/111+41528408..41529133expressed protein
LOC_Os01g71220Os.53646.1.S1_at10/111+41530698..41535561hydroxyproline-rich glycoprotein family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23997.1.S1_at--292--3051Chr01:41512855..41512879 (25 bp)
AATCGATTGCTTGCTGGAATTCCAT
LOC_Os01g71180
OsAffx.23997.1.S1_at--1126--391Chr01:41512883..41512907 (25 bp)
ATCAGCTTTTGGATTCCATGGGCTT
LOC_Os01g71180
OsAffx.23997.1.S1_at--856--4331Chr01:41512898..41512922 (25 bp)
CCATGGGCTTGGGTTGAAATCGATT
LOC_Os01g71180
OsAffx.23997.1.S1_at--1066--1171Chr01:41512968..41512992 (25 bp)
AGTACTTTTATTGCTCTGTTGTCAG
LOC_Os01g71180
OsAffx.23997.1.S1_at--960--6631Chr01:41512985..41513009 (25 bp)
GTTGTCAGCTTGCAGTCACTCTGGA
LOC_Os01g71180
OsAffx.23997.1.S1_at--935--7091Chr01:41512999..41513023 (25 bp)
GTCACTCTGGACTTACTGATGAAGG
LOC_Os01g71180
OsAffx.23997.1.S1_at--1063--7291Chr01:41513182..41513206 (25 bp)
GTGCGCTGTTAAGTGCTTGCAGCAA
LOC_Os01g71180
OsAffx.23997.1.S1_at--221--8611Chr01:41513224..41513248 (25 bp)
TGTGTGAATCCGTTGCCAAGCATTT
LOC_Os01g71180
OsAffx.23997.1.S1_at--118--3591Chr01:41513244..41513268 (25 bp)
CATTTGCTCTGTCTGGAGCCTGAAA
LOC_Os01g71180
OsAffx.23997.1.S1_at--35--7391Chr01:41513283..41513307 (25 bp)
GTGACCATGTCTAACCTGTATGCGT
LOC_Os01g71180
OsAffx.23997.1.S1_at--661--8471Chr01:41513324..41513348 (25 bp)
TGGCGCAGTGCAAGTCAGGGACATT
LOC_Os01g71180
Target Sequence 
AATCGATTGCTTGCTGGAATTCCATGATATCAGCTTTTGGATTCCATGGGCTTGGGTTGAAATCGATTGAAATTTTCTGG
AAGATGAATAATTCTGGAGTGAAAGCTACAAGAAGTACTTTTATTGCTCTGTTGTCAGCTTGCAGTCACTCTGGACTTAC
TGATGAAGGATTGAAGTACTACCATCTTATGATAGAACATTTTGGGATTATCCCAACCCCAGAACACCATGTCTGTGTTG
TAGACATGCTTGGGCGTGCTGGTCGGCTGCAGGAAGCACATAAGTTTGTGGAGAGTTTACCATCGAAACAAGCACATGGA
GTCTGGGGTGCGCTGTTAAGTGCTTGCAGCAAGAAATCTGAACTGAAGATGTGTGAATCCGTTGCCAAGCATTTGCTCTG
TCTGGAGCCTGAAAATAGTGGATATTATGTGACCATGTCTAACCTGTATGCGTATCAAGACATGTGGAGTGGCGCAGTGC
AAGTCAGGGACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23997.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis