Browse Element(s) Details


OsAffx.24058.1.S1_at

Description tigr:9630.m00098
TID=OsAffx.24058.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY082959 CONSTANS-like protein CO5
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0199011/11CCT motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01960Os.20525.1.S1_at11/112+534963..538203Kinesin light chain, putative, expressed
LOC_Os02g01970OsAffx.24057.1.S1_at10/112+540144..544923expressed protein
LOC_Os02g01980Os.24700.1.A1_at11/112+545700..548055GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g01990OsAffx.24058.1.S1_at11/112+549625..551182CCT motif family protein
LOC_Os02g02000Os.53784.1.S1_at11/112+554579..556320Cytochrome P450 74A3, putative, expressed
LOC_Os02g02010OsAffx.2483.1.S1_at10/112+558915..559965hypothetical protein
LOC_Os02g02020Os.7241.1.S1_at11/112+561897..564369pentatricopeptide, putative, expressed
LOC_Os02g02030Os.51555.1.S1_at11/112+564717..565953expressed protein
LOC_Os02g02040Os.6801.2.S1_x_at11/112+566048..572465Protein kinase domain containing protein, expressed
LOC_Os02g02040Os.37215.1.S1_at1/112+566048..572465Protein kinase domain containing protein, expressed
LOC_Os02g02050Os.23574.1.S1_at11/112+573103..589743SNF2 family N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24058.1.S1_at--96--8511Chr02:550393..550417 (25 bp)
TGGCATCCTCATCGTGTTCAGACAT
LOC_Os02g01990
OsAffx.24058.1.S1_at--671--6751Chr02:550378..550402 (25 bp)
GTTCAGACATCGCACTGTTATCAGA
LOC_Os02g01990
OsAffx.24058.1.S1_at--480--1271Chr02:550356..550380 (25 bp)
AGATACTAGCTTTCTGCAGCCTCTG
LOC_Os02g01990
OsAffx.24058.1.S1_at--794--1831Chr02:550321..550345 (25 bp)
ACGCACCTTATGTTCAGTTACCGAT
LOC_Os02g01990
OsAffx.24058.1.S1_at--40--1591Chr02:550237..550261 (25 bp)
AGCTCATACCGCAATCTTCAGATCA
LOC_Os02g01990
OsAffx.24058.1.S1_at--515--1271Chr02:550218..550242 (25 bp)
AGATCATAGTCTTCTGCAACCACTG
LOC_Os02g01990
OsAffx.24058.1.S1_at--940--3471Chr02:550126..550150 (25 bp)
CAGGTTCAGAGTTTCCCTGTGTGAA
LOC_Os02g01990
OsAffx.24058.1.S1_at--348--5211Chr02:550104..550128 (25 bp)
GAATTTTCAGAGCTCCAACACGGGC
LOC_Os02g01990
OsAffx.24058.1.S1_at--840--4391Chr02:550045..550069 (25 bp)
GCCAAGATCAACAGACCTCGCATAT
LOC_Os02g01990
OsAffx.24058.1.S1_at--546--9351Chr02:550028..550052 (25 bp)
TCGCATATCGTGCTGCCCGAGAAAT
LOC_Os02g01990
OsAffx.24058.1.S1_at--33--9731Chr02:549737..549761 (25 bp)
TCAAGCAGATAATGTACGCCTCCCG
LOC_Os02g01990
Target Sequence 
TGGCATCCTCATCGTGTTCAGACATCGCACTGTTATCAGATACTAGCTTTCTGCAGCCTCTGAACATGAGCAACGCACCT
TATGTTCAGTTACCGATGATGGACGCGAACATCAACAACGAGATAGGAGCAGCAACTTCATCTTCAGAACTCGCACAGCT
CATACCGCAATCTTCAGATCATAGTCTTCTGCAACCACTGAACATAAACGACGAAACGGCATATGATCAGTTACCGGTGA
TAGACACAAACAGTAGCAACAACAACACAGGTTCAGAGTTTCCCTGTGTGAATTTTCAGAGCTCCAACACGGGCTCGCTG
CTGGGTGGGAGCTCAAACATGTTTGACGGCCAAGATCAACAGACCTCGCATATCGTGCTGCCCGAGAAATCTTGCCCTGA
TCCGGAGAAGAGACAGCGAGCTGTGCAGAGATACAAGGAGAAAAAGAGCAACAGGAGGTTTGTCAAGCAGATAATGTACG
CCTCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24058.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis