Browse Element(s) Details


OsAffx.24084.1.S1_x_at

Description tigr:9630.m00260
TID=OsAffx.24084.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to transcription factor hbp-1a (histone-specific transcription factor hbp1). (wheat
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0358011/11Transcription factor HBP-1a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03530OsAffx.11878.1.S1_at11/112+1433310..1436848expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_s_at11/112+1433310..1436848expressed protein
LOC_Os02g03540Os.27658.1.S1_a_at11/112+1437433..1441125Ribose-phosphate pyrophosphokinase 1, putative, expressed
LOC_Os02g03550Os.53507.1.S1_at10/112+1443911..1446402xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os02g03560Os.13649.1.S1_at11/112+1447139..1449635expressed protein
LOC_Os02g03570OsAffx.11879.1.S1_at11/112+1450176..1450766Hsp20/alpha crystallin family protein, expressed
LOC_Os02g03580Os.26491.1.S1_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580OsAffx.24084.1.S1_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580OsAffx.24084.1.S1_x_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580Os.47413.1.S1_at1/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03590Os.54039.1.S1_at6/112+1461924..1468160expressed protein
LOC_Os02g03600Os.51934.1.S1_at8/112+1469295..1474710DnaJ domain containing protein, expressed
LOC_Os02g03600Os.50120.1.S1_at2/112+1469295..1474710DnaJ domain containing protein, expressed
LOC_Os02g03610Os.18586.1.S1_at11/112+1476344..1480285ADP-ribosylation factor, putative, expressed
LOC_Os02g03620Os.9115.1.S1_at11/112+1481242..1485111Ubiquitin ligase SINAT2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009637biological_processresponse to blue light
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24084.1.S1_x_at--358--6231Chr02:1460057..1460081 (25 bp)
GATGGCTCCAACTCAAACGGGTGTA
LOC_Os02g03580
OsAffx.24084.1.S1_x_at--134--8051Chr02:1460091..1460115 (25 bp)
GGAGTTGCTCCCACAACAAACTTGA
LOC_Os02g03580
OsAffx.24084.1.S1_x_at--662--4471Chr02:1460153..1460177 (25 bp)
GCCTGTTCCTGCAATGCATGGCAAA
LOC_Os02g03580
OsAffx.24084.1.S1_x_at--1126--8231Chr02:1460172..1460196 (25 bp)
GGCAAAGCATCGTCTGGTTCAGTTC
LOC_Os02g03580
OsAffx.24084.1.S1_x_at--522--3831Chr02:1460622..1460695 (25 bp)
CTGCGCAAGCAGAACATCATGGATA
LOC_Os02g03580
OsAffx.24084.1.S1_x_at--490--7951Chr02:1460691..1460715 (25 bp)
GGATAGTCTTATTGAAGCACCAAAA
LOC_Os02g03580
OsAffx.24084.1.S1_x_at--640--1491Chr02:1460706..1460730 (25 bp)
AGCACCAAAATATTTGTTCCAGGCT
LOC_Os02g03580
OsAffx.24084.1.S1_x_at--924--2771Chr02:1460738..1460762 (25 bp)
AAGAGCTTTCTGTACGCGCTGACAA
LOC_Os02g03580
OsAffx.24084.1.S1_x_at--234--5531Chr02:1460773..1460797 (25 bp)
GAAAACTCCTCTCTTAGGGCTGAGC
LOC_Os02g03580
OsAffx.24084.1.S1_x_at--381--971Chr02:1460813..1460837 (25 bp)
AGGAGTACGAGGCACTTCTTTCACA
LOC_Os02g03580
OsAffx.24084.1.S1_x_at--429--10571Chr02:1460828..1460852 (25 bp)
TTCTTTCACACAATGCTTCACTCAA
LOC_Os02g03580
Target Sequence 
GATGGCTCCAACTCAAACGGGTGTAGTAATCGGGGGAGTTGCTCCCACAACAAACTTGAACATAGGAATGGACTACTGGG
GTGCTGCTGGTTCTTCGCCTGTTCCTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAATGGGATGAA
AGAGAGCTCAAGAAGCAGAAAAGGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGAACATCAT
GGATAGTCTTATTGAAGCACCAAAATATTTGTTCCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGG
CAGAAAACTCCTCTCTTAGGGCTGAGCTTGAACGGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTC
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24084.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis