Browse Element(s) Details


OsAffx.24139.1.S1_at

Description tigr:9630.m00607
TID=OsAffx.24139.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BeigeBEACH domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0672011/11Beige/BEACH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06630Os.6665.1.S1_at11/112+3336125..3339092Peroxidase family protein, expressed
LOC_Os02g06640Os.22660.3.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.1.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.57479.1.S1_x_at10/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.2.S1_x_at4/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.25748.1.S1_x_at1/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06650Os.6678.1.S1_at4/112+3345151..3346400COX VIIa, putative
LOC_Os02g06660OsAffx.24135.1.S1_at10/112+3351125..3352608P21-Rho-binding domain containing protein
LOC_Os02g06670OsAffx.24136.1.S1_at11/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g06670OsAffx.2526.1.S1_at1/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g06690OsAffx.2526.1.S1_at11/112+3357043..3358155early salt stress and cold acclimation-induced protein 2-1, putative, expressed
LOC_Os02g06700Os.7876.1.S1_at11/112+3358909..336071840S ribosomal protein S14, putative, expressed
LOC_Os02g06710OsAffx.24138.1.S1_s_at11/112+3362058..3362715expressed protein
LOC_Os02g06720OsAffx.24139.1.S1_at11/112+3362819..3369515Beige/BEACH domain containing protein, expressed
LOC_Os02g06720Os.19805.1.S1_at10/112+3362819..3369515Beige/BEACH domain containing protein, expressed
LOC_Os02g06720Os.23284.1.S1_at9/112+3362819..3369515Beige/BEACH domain containing protein, expressed
LOC_Os02g06730NANA2+3386880..3387275hypothetical protein
LOC_Os02g06740OsAffx.19542.3.S1_x_at7/112+3392271..3397700retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005739cellular_componentmitochondrion
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24139.1.S1_at--403--3811Chr02:3367045..3367069 (25 bp)
CTCCATGGGCAAAGGTAACGAACTG
LOC_Os02g06720
OsAffx.24139.1.S1_at--433--7831Chr02:3367032..3367056 (25 bp)
GGTAACGAACTGTTTCCACATATGA
LOC_Os02g06720
OsAffx.24139.1.S1_at--373--731Chr02:3367011..3367035 (25 bp)
ATGATTGTACTAAGCATCCATGCTC
LOC_Os02g06720
OsAffx.24139.1.S1_at--653--2411Chr02:3366937..3366961 (25 bp)
AAAAATCCTGTATTGAGCACCGGTA
LOC_Os02g06720
OsAffx.24139.1.S1_at--245--5931Chr02:3366923..3366947 (25 bp)
GAGCACCGGTATAGTTTTTATTCAT
LOC_Os02g06720
OsAffx.24139.1.S1_at--874--6811Chr02:3366910..3366934 (25 bp)
GTTTTTATTCATAATCTGCTAGCAT
LOC_Os02g06720
OsAffx.24139.1.S1_at--589--471Chr02:3366897..3366921 (25 bp)
ATCTGCTAGCATACGGTTGATCCAT
LOC_Os02g06720
OsAffx.24139.1.S1_at--858--9771Chr02:3366873..3366897 (25 bp)
TAAGAATGGTTTATGTCCCTGTTGA
LOC_Os02g06720
OsAffx.24139.1.S1_at--945--10111Chr02:3366862..3366886 (25 bp)
TATGTCCCTGTTGAGTTGCATCCTG
LOC_Os02g06720
OsAffx.24139.1.S1_at--686--10731Chr02:3366847..3366871 (25 bp)
TTGCATCCTGTGGTCTTCATATAGT
LOC_Os02g06720
OsAffx.24139.1.S1_at--897--3131Chr02:3366793..3366817 (25 bp)
AATTTTGGTCAGAAACGTGTTCCAT
LOC_Os02g06720
Target Sequence 
CTCCATGGGCAAAGGTAACGAACTGTTTCCACATATGATTGTACTAAGCATCCATGCTCATGTATTAAATCATGATATTT
ATTAGTTTTTCTTGGGTGAGGAACAGAAAAAAATCCTGTATTGAGCACCGGTATAGTTTTTATTCATAATCTGCTAGCAT
ACGGTTGATCCATAAGAATGGTTTATGTCCCTGTTGAGTTGCATCCTGTGGTCTTCATATAGTTTTGAAATTTTTTGTAC
TTCAGTTATAAAAATTTTGGTCAGAAACGTGTTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis