Browse Element(s) Details


OsAffx.24155.1.S1_at

Description tigr:9630.m00733
TID=OsAffx.24155.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=leucine-rich repeat transmembrane protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g078108/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07780Os.51367.2.S1_x_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S2_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S1_x_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S3_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780OsAffx.2442.1.S1_x_at1/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07790Os.8323.1.S1_a_at11/112+4078516..4081523Protein kinase domain containing protein, expressed
LOC_Os02g07800OsAffx.11931.1.S1_at10/112+4083020..4086044expressed protein
LOC_Os02g07810OsAffx.24155.1.S1_x_at9/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810OsAffx.24155.1.S1_at8/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810OsAffx.5111.1.S1_x_at1/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810Os.15849.2.A1_s_at1/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07820Os.11392.2.S1_at11/112+4095838..4098077expressed protein
LOC_Os02g07830Os.50590.2.A1_at10/112+4103384..4105654Cation transport protein, expressed
LOC_Os02g07840Os.1502.1.S1_at11/112+4109767..4112676bZIP transcription factor family protein, expressed
LOC_Os02g07850OsAffx.11932.1.S1_x_at10/112+4112945..4115853hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24155.1.S1_at--915--2111Chr02:4088642..4088666 (25 bp)
ACATGGAGGCGGTGCTGTCGGACTA
LOC_Os02g07810
OsAffx.24155.1.S1_at--938--9111Chr02:4088654..4088678 (25 bp)
TGCTGTCGGACTACGCGCTGGTGCC
LOC_Os02g07810
OsAffx.24155.1.S1_at--398--9851Chr02:4088719..4088743 (25 bp)
TACAAGGCGCCGGAGTGCGTCGCGG
LOC_Os02g07810
OsAffx.24155.1.S1_at--883--1671Chr02:4088785..4088809 (25 bp)
AGCCTCGGGATCCTCATCCTCGAGG
LOC_Os02g07810
OsAffx.24155.1.S1_at--368--7651Chr02:4088791..4088815 (25 bp)
GGGATCCTCATCCTCGAGGTGCTCA
LOC_Os02g07810
OsAffx.24155.1.S1_at--496--9331NONE
TCGCCGGCTGGGTCAGCTCCGTCTT
NONE
OsAffx.24155.1.S1_at--500--7111NONE
GTCAGCTCCGTCTTCAGCGAGGAGC
NONE
OsAffx.24155.1.S1_at--699--1591NONE
AGCTCCGTCTTCAGCGAGGAGCGCA
NONE
OsAffx.24155.1.S1_at--975--10611Chr02:4088920..4089093 (25 bp)
TTCGACAAGGACATGGCCCGCCGCC
LOC_Os02g07810
OsAffx.24155.1.S1_at--1005--1891Chr02:4089008..4089032 (25 bp)
ACGTCGACCAGAGGTGGGAGCTCAA
LOC_Os02g07810
OsAffx.24155.1.S1_at--18--4971Chr02:4089047..4089071 (25 bp)
GCATCGAGGAGATCAGGGTTCCGGA
LOC_Os02g07810
Target Sequence 
ACATGGAGGCGGTGCTGTCGGACTACGCGCTGGTGCCGGTGGTCACGGCGAGCGCGGCGGCGCAGGTGATGGTGGCGTAC
AAGGCGCCGGAGTGCGTCGCGGCGGCGGCGGCCGGCAAGCCGTCGAAGAAGAGCGACGTGTGGAGCCTCGGGATCCTCAT
CCTCGAGGTGCTCACCGGCAAGTTCCCGGCGAACTACCTCCGCCAGGGGCGGCAGGACAACGCCGACCTCGCCGGCTGGG
TCAGCTCCGTCTTCAGCGAGGAGCGCACCGGCGAGGTGTTCGACAAGGACATGGCCCGCCGCCGGCGCCGGCGCCGAGGA
CGACATGCTCAAGCTGCTCCACGTCGGCCTCGGCTGCTGCGACGCCGACGTCGACCAGAGGTGGGAGCTCAAGACGGCGA
TCGCGCGCATCGAGGAGATCAGGGTTCCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis