Browse Element(s) Details


OsAffx.24174.1.S1_at

Description tigr:9630.m00853
TID=OsAffx.24174.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0940011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09330OsAffx.11952.1.S1_at10/112+4800371..4802379hypothetical protein
LOC_Os02g09330OsAffx.28081.1.S1_x_at1/112+4800371..4802379hypothetical protein
LOC_Os02g09340Os.52523.1.S1_at11/112+4803287..4806454expressed protein
LOC_Os02g09359Os.8294.1.S1_at11/112+4808246..4817116Protein kinase domain containing protein, expressed
LOC_Os02g09380Os.5301.1.S1_at11/112+4820461..4822679expressed protein
LOC_Os02g09390OsAffx.28081.1.S1_x_at1/112+4824243..4825852Cytochrome P450 family protein, expressed
LOC_Os02g09390OsAffx.20024.1.S1_x_at1/112+4824243..4825852Cytochrome P450 family protein, expressed
LOC_Os02g09400OsAffx.24174.1.S1_at11/112+4826411..4828204Cytochrome P450 family protein, expressed
LOC_Os02g09410NANA2+4828668..4830330Cytochrome P450 family protein, expressed
LOC_Os02g09420OsAffx.11954.1.S1_s_at11/112+4831146..4835173cyclase family protein, putative, expressed
LOC_Os02g09430Os.52186.1.S1_at11/112+4838496..4841887Exostosin family protein, expressed
LOC_Os02g09440Os.51356.1.S1_at11/112+4843090..4847180expressed protein
LOC_Os02g09440OsAffx.11955.1.S1_at11/112+4843090..4847180expressed protein
LOC_Os02g09450Os.5603.1.S1_at11/112+4847748..4852501Glycerophosphoryl diester phosphodiesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24174.1.S1_at--988--51Chr02:4827649..4827673 (25 bp)
ATTGCTACTGCCACGCAAATGCGGA
LOC_Os02g09400
OsAffx.24174.1.S1_at--651--6471Chr02:4827685..4827709 (25 bp)
GATACTTGGATTTGACGTACCTGAG
LOC_Os02g09400
OsAffx.24174.1.S1_at--932--8091Chr02:4827748..4827772 (25 bp)
GGACCTGACGTATTGGGATAAGCCT
LOC_Os02g09400
OsAffx.24174.1.S1_at--98--2671Chr02:4827767..4827791 (25 bp)
AAGCCTGAGGAGTTCGTGCCTGAGA
LOC_Os02g09400
OsAffx.24174.1.S1_at--1042--251Chr02:4827863..4827887 (25 bp)
ATATGCCCTGGCATCACATTCGGGA
LOC_Os02g09400
OsAffx.24174.1.S1_at--776--4991Chr02:4827892..4827916 (25 bp)
GCATGTTGAGCTTGTTCTCTCTGCA
LOC_Os02g09400
OsAffx.24174.1.S1_at--52--9511Chr02:4827909..4827933 (25 bp)
TCTCTGCACTTCTGTACCACTTTGA
LOC_Os02g09400
OsAffx.24174.1.S1_at--949--5911Chr02:4827938..4827962 (25 bp)
GAGCTTCCACAAGGGATGGCGGCAA
LOC_Os02g09400
OsAffx.24174.1.S1_at--666--2191Chr02:4828000..4828024 (25 bp)
ACAACGGCGGTCTAACCTCTTGGTG
LOC_Os02g09400
OsAffx.24174.1.S1_at--1000--10831Chr02:4828019..4828043 (25 bp)
TTGGTGCGTCCAATCCATCGTGTAT
LOC_Os02g09400
OsAffx.24174.1.S1_at--486--571Chr02:4828031..4828055 (25 bp)
ATCCATCGTGTATCGGTTCCAGTAG
LOC_Os02g09400
Target Sequence 
ATTGCTACTGCCACGCAAATGCGGAAGCACGTGCAAGATACTTGGATTTGACGTACCTGAGGGGGTCATGGTGATCGTGA
ACGCGTGGGCGATTGGTAGGGACCTGACGTATTGGGATAAGCCTGAGGAGTTCGTGCCTGAGAGGTTTGAACACAACGGG
AGGGATTTCAAGGGAATGGACTTCGAGTTCATACCGTTTGGAGCTGGACGAAGGATATGCCCTGGCATCACATTCGGGAT
GGCGCATGTTGAGCTTGTTCTCTCTGCACTTCTGTACCACTTTGACTGGGAGCTTCCACAAGGGATGGCGGCAAAGGATC
TAGACATGACAGAGGATTTTGGAGTCACAACACAACGGCGGTCTAACCTCTTGGTGCGTCCAATCCATCGTGTATCGGTT
CCAGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24174.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis