Browse Element(s) Details


OsAffx.24242.1.S1_at

Description gb:NM_186455.1
DB_XREF= gi:34899995
GEN=P0039H02.15
TID=OsAffx.24242.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0039H02.15 (P0039H02.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g070949/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07060Os.31875.2.S1_at10/117+3481393..3484193Anticodon binding domain containing protein, expressed
LOC_Os07g07060Os.31875.1.S1_at8/117+3481393..3484193Anticodon binding domain containing protein, expressed
LOC_Os07g07070Os.39913.1.A1_at11/117+3484259..3487687C2 domain containing protein, expressed
LOC_Os07g07080Os.44430.1.S1_at11/117+3490401..3497610ankyrin repeat family protein, putative, expressed
LOC_Os07g07080Os.44430.1.S2_at6/117+3490401..3497610ankyrin repeat family protein, putative, expressed
LOC_Os07g07094OsAffx.24242.3.S1_s_at11/117+3503817..3510301expressed protein
LOC_Os07g07094OsAffx.24242.3.S1_at9/117+3503817..3510301expressed protein
LOC_Os07g07094OsAffx.24242.1.S1_at9/117+3503817..3510301expressed protein
LOC_Os07g07110Os.46314.2.S1_x_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07110Os.27691.1.S1_x_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07110OsAffx.32036.1.S1_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07120Os.27691.2.S1_x_at2/117+3518557..3519737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07120Os.27691.1.S1_x_at2/117+3518557..3519737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07130Os.31929.11.S1_x_at11/117+3522202..3524008hypothetical protein
LOC_Os07g07140Os.46018.1.S1_x_at9/117+3526099..3527973hypothetical protein
LOC_Os07g07140Os.46018.1.S1_at9/117+3526099..3527973hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24242.1.S1_at--571--4411Chr07:3506274..3506298 (25 bp)
GCCACCTGGCCCGTCTAGAAAGAAG
LOC_Os07g07094
OsAffx.24242.1.S1_at--1094--6111NONE
GAGGGTTACATATCGATTTAGACAC
NONE
OsAffx.24242.1.S1_at--1139--2171Chr07:3508349..3508373 (25 bp)
ACAAATGCGTATTCATGGACTTCGA
LOC_Os07g07094
OsAffx.24242.1.S1_at--621--8531Chr07:3508364..3508388 (25 bp)
TGGACTTCGAATACATCAGGGATGC
LOC_Os07g07094
OsAffx.24242.1.S1_at--688--7651Chr07:3508382..3508406 (25 bp)
GGGATGCAAGACTTAACACTGGAAT
LOC_Os07g07094
OsAffx.24242.1.S1_at--302--6591Chr07:3508411..3508435 (25 bp)
GATTCCTGGATTCATAAATACCTCG
LOC_Os07g07094
OsAffx.24242.1.S1_at--345--3011Chr07:3508427..3508451 (25 bp)
AATACCTCGGGTATGTCCGGATTCT
LOC_Os07g07094
OsAffx.24242.1.S1_at--906--751Chr07:3508439..3508463 (25 bp)
ATGTCCGGATTCTCGAGATCCACGT
LOC_Os07g07094
OsAffx.24242.1.S1_at--407--6031Chr07:3508453..3508477 (25 bp)
GAGATCCACGTTTGCACCAACGCGT
LOC_Os07g07094
OsAffx.24242.1.S1_at--1060--1691Chr07:3508468..3508492 (25 bp)
ACCAACGCGTGCTGCATTTATTCGT
LOC_Os07g07094
OsAffx.24242.1.S1_at--100--111NONE
ATTCGTCGCGCGGAGGTGATCCCTT
NONE
Target Sequence 
GCCACCTGGCCCGTCTAGAAAGAAGGAGAGAGAGAGGGTTACATATCGATTTAGACACTACAAATGCGTATTCATGGACT
TCGAATACATCAGGGATGCAAGACTTAACACTGGAATAGCAGATTCCTGGATTCATAAATACCTCGGGTATGTCCGGATT
CTCGAGATCCACGTTTGCACCAACGCGTGCTGCATTTATTCGTCGCGCGGAGGTGATCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24242.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis