Browse Element(s) Details


OsAffx.24277.1.S1_at

Description tigr:9630.m01528
TID=OsAffx.24277.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Xa1-like protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g162609/11Xa1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16220OsAffx.29675.1.S1_x_at11/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.29675.4.S1_x_at6/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.29675.2.S1_x_at4/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.7575.1.S1_x_at2/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.29675.3.S1_x_at2/112+9215265..9222849hypothetical protein
LOC_Os02g16220Os.45229.1.S1_at1/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.7575.1.S1_at1/112+9215265..9222849hypothetical protein
LOC_Os02g16230NANA2+9223456..9223827hypothetical protein
LOC_Os02g16240OsAffx.24649.3.S1_at10/112+9233932..9238109transposon protein, putative, unclassified
LOC_Os02g16240OsAffx.24649.1.S1_at5/112+9233932..9238109transposon protein, putative, unclassified
LOC_Os02g16250OsAffx.2640.1.S1_at11/112+9238437..9239234NBS-LRR disease resistance protein, putative
LOC_Os02g16260OsAffx.24277.1.S1_at9/112+9240038..9243851Xa1, putative
LOC_Os02g16270Os.53610.1.S1_at11/112+9257996..9262612NB-ARC domain containing protein, expressed
LOC_Os02g16280OsAffx.25367.1.S1_at1/112+9263254..9267577retrotransposon, putative, centromere-specific
LOC_Os02g16290OsAffx.28402.1.S1_at1/112+9268756..9272208transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24277.1.S1_at--376--3251Chr02:9240999..9241023 (25 bp)
CAAGCCTTGATGTCACAGGATGCAA
LOC_Os02g16260
OsAffx.24277.1.S1_at--913--7871Chr02:9241052..9241076 (25 bp)
GGTTTTATCTTTTGTTCAGTTCAGC
LOC_Os02g16260
OsAffx.24277.1.S1_at--254--2271NONE
AAATCATTGGGTGGCTCCTTCCAAC
NONE
OsAffx.24277.1.S1_at--449--3631Chr02:9241662..9241686 (25 bp)
CTTCCAACAGCTGGTACGACTTGAT
LOC_Os02g16260
OsAffx.24277.1.S1_at--175--10471Chr02:9241712..9241736 (25 bp)
TTGAAACCATTTGTAGCCTCCTCGC
LOC_Os02g16260
OsAffx.24277.1.S1_at--1152--4771Chr02:9241735..9241759 (25 bp)
GCTGCGACCCTCATCGAGTTGAGAT
LOC_Os02g16260
OsAffx.24277.1.S1_at--978--6031Chr02:9241750..9241774 (25 bp)
GAGTTGAGATTCACGTCTGACTTGA
LOC_Os02g16260
OsAffx.24277.1.S1_at--254--8271Chr02:9242317..9242341 (25 bp)
GGCAGAGGCACATTGACCCAGTATG
LOC_Os02g16260
OsAffx.24277.1.S1_at--488--6911Chr02:9242337..9242358 (22 bp)
GTATGGTCCACTGGGCACAATGCTT
LOC_Os02g16260
OsAffx.24277.1.S1_at--640--631Chr02:9122346..9122365 (20 bp)
ATGCTTGCAGCAACCGGATGGCGAG
NONE
OsAffx.24277.1.S1_at--1045--7551Chr02:9243691..9243715 (25 bp)
GGGCCGAATGCGCTCAAACAAATCA
LOC_Os02g16260
Target Sequence 
CAAGCCTTGATGTCACAGGATGCAAAAGCATGTTATCCAGTGAAGTAGACAATGGTTTTATCTTTTGTTCAGTTCAGCAA
CTCAATCTCAGAGATTGTCATCTTACCGAAAAATCATTGGGTGGCTCCTTCCAACAGCTGGTACGACTTGATGTGGACAG
TATCTCAGCAGTGTTTGTTGAAACCATTTGTAGCCTCCTCGCTGCGACCCTCATCGAGTTGAGATTCACGTCTGACTTGA
TTACAGAAAGCTTCACAGAAAAGCAGGAGCAGAAAGGTGAGAGCAAGATGTCTCAGGGGCAGAGGCACATTGACCCAGTA
TGGTCCACTGGGCACAATGCTTGCAGCAACCGGATGGCGAGCAAGGTTACAGAGACGGCGCCGGGGGCCCTCTCCAATGG
GCTGTGGCTTGCCTGGGCCGAATGCGCTCAAACAAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24277.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis