Browse Element(s) Details


OsAffx.24436.2.S1_at

Description tigr:9630.m02502
TID=OsAffx.24436.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to tyrosine-specific protein phosphatase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2655010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26490OsAffx.20858.5.S1_x_at8/112+15552665..15555486hypothetical protein
LOC_Os02g26490OsAffx.20858.1.S1_x_at6/112+15552665..15555486hypothetical protein
LOC_Os02g26490OsAffx.20858.4.S1_x_at4/112+15552665..15555486hypothetical protein
LOC_Os02g26500Os.11575.4.S1_x_at4/112+15556364..15560053transposon protein, putative, Pong sub-class
LOC_Os02g26500Os.11575.3.S1_x_at1/112+15556364..15560053transposon protein, putative, Pong sub-class
LOC_Os02g26510OsAffx.24433.1.S1_at11/112+15560201..15562653hypothetical protein
LOC_Os02g26520OsAffx.12206.1.S1_at11/112+15565940..15567537hypothetical protein
LOC_Os02g26530OsAffx.24434.1.S1_at11/112+15568665..15569111hypothetical protein
LOC_Os02g26540NANA2+15571271..15571507hypothetical protein
LOC_Os02g26550OsAffx.24436.2.S1_at10/112+15578247..15584223expressed protein
LOC_Os02g26550Os.27457.1.S1_at2/112+15578247..15584223expressed protein
LOC_Os02g26560OsAffx.12207.1.S1_at11/112+15589114..15591960expressed protein
LOC_Os02g26570Os.21854.2.S1_x_at2/112+15603222..15605304hypothetical protein
LOC_Os02g26580NANA2+15606200..15606556hypothetical protein
LOC_Os02g26590NANA2+15607457..15607705hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24436.2.S1_at--944--51Chr02:15580417..15580441 (25 bp)
ATTGCATCCAATCCGCAATATCGAG
LOC_Os02g26550
OsAffx.24436.2.S1_at--404--4071Chr02:15580438..15580462 (25 bp)
CGAGCGGCTCGAGAAACGTATTGTT
LOC_Os02g26550
OsAffx.24436.2.S1_at--415--311Chr02:15580505..15580529 (25 bp)
ATACCACTTGAGAGGCTGTCACACT
LOC_Os02g26550
OsAffx.24436.2.S1_at--1109--7431Chr02:15582538..15582562 (25 bp)
GTGTCACAACACTTTAGCAGGCTTT
LOC_Os02g26550
OsAffx.24436.2.S1_at--548--1531Chr02:15582553..15582577 (25 bp)
AGCAGGCTTTGTTTATCTGTATCAT
LOC_Os02g26550
OsAffx.24436.2.S1_at--941--10151Chr02:15582566..15582590 (25 bp)
TATCTGTATCATTCTCTACTTCTCT
LOC_Os02g26550
OsAffx.24436.2.S1_at--631--3731Chr02:15582581..15582605 (25 bp)
CTACTTCTCTTGCATCTCGATATTG
LOC_Os02g26550
OsAffx.24436.2.S1_at--1112--6511NONE
GATATTGCATATACATTCTGGCTAC
NONE
OsAffx.24436.2.S1_at--230--111Chr02:15583346..15583369 (24 bp)
ATTCTGGCTACTCTGATGCGTTGGC
LOC_Os02g26550
OsAffx.24436.2.S1_at--690--391Chr02:15583380..15583404 (25 bp)
ATCACCTGGCAAGACACTCAGATAT
LOC_Os02g26550
OsAffx.24436.2.S1_at--56--7051Chr02:15583654..15583675 (22 bp)
GTAAAGCTGTTGTCACATCCGGCAA
LOC_Os02g26550
Target Sequence 
ATTGCATCCAATCCGCAATATCGAGCGGCTCGAGAAACGTATTGTTGGCATTCTTCATGAGCTTTTAAGCTTGACAATAG
AAAAGATGATACCACTTGAGAGGCTGTCACACTTCAGAAAACCTTTTGAAATGGAGGTAAACCTGCGGGAACTTATTCTT
AAGCACCCTGGCATTTTCTACATCTCAACCAAAGGAAGCACACAAACTGTCCTTCTTAGAGAGAGTTACAATTCCATTAA
TGATAATGTAGTAGTGTCACAACACTTTAGCAGGCTTTGTTTATCTGTATCATTCTCTACTTCTCTTGCATCTCGATATT
GCATATACATTCTGGCTACTCTGATGCGTTGGCTGCATCTGCAATCACCTGGCAAGACACTCAGATATCTTTCTGAGAGT
AAAGCTGTTGTCACATCCGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24436.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis