Browse Element(s) Details


OsAffx.24512.1.S1_at

Description tigr:9630.m02923
TID=OsAffx.24512.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3054011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30480NANA2+18141334..18144991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30490NANA2+18145836..18146654hypothetical protein
LOC_Os02g30500NANA2+18147890..18149103hypothetical protein
LOC_Os02g30510OsAffx.8166.1.S1_at1/112+18149989..18152922retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30510OsAffx.20387.1.S1_x_at1/112+18149989..18152922retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30520NANA2+18153175..18156347retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30530Os.51332.1.S1_at10/112+18157101..18160997transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g30540OsAffx.24512.1.S1_at11/112+18167489..18172501Leucine Rich Repeat family protein
LOC_Os02g30550OsAffx.12292.1.S1_x_at11/112+18175992..18176204hypothetical protein
LOC_Os02g30560OsAffx.12293.1.S1_at11/112+18180503..18180790hypothetical protein
LOC_Os02g30570OsAffx.5335.1.S1_at11/112+18181629..18184765F-box protein interaction domain containing protein
LOC_Os02g30570OsAffx.24476.1.S1_at1/112+18181629..18184765F-box protein interaction domain containing protein
LOC_Os02g30580OsAffx.22947.1.S1_x_at11/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.2.S1_x_at6/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.3.S1_x_at6/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.5.S1_x_at1/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24512.1.S1_at--104--6791Chr02:18170533..18170557 (25 bp)
GTTTTAACTGCGAAAAGGCCTACAG
LOC_Os02g30540
OsAffx.24512.1.S1_at--966--8871Chr02:18170568..18170592 (25 bp)
TGATGGAGAGCTAAGCCTCAGGCAA
LOC_Os02g30540
OsAffx.24512.1.S1_at--607--8611Chr02:18170593..18170617 (25 bp)
TGGGTTTTTGATGCATTTCCGGCTC
LOC_Os02g30540
OsAffx.24512.1.S1_at--1137--8311Chr02:18170613..18170637 (25 bp)
GGCTCGGCTTGTTGATGTTGTTGAC
LOC_Os02g30540
OsAffx.24512.1.S1_at--123--6651Chr02:18170629..18170653 (25 bp)
GTTGTTGACCACAAGCTGCTACAAG
LOC_Os02g30540
OsAffx.24512.1.S1_at--351--811Chr02:18170666..18170690 (25 bp)
ATGGGATCGGCGACATTGGAACAGC
LOC_Os02g30540
OsAffx.24512.1.S1_at--762--11Chr02:18170680..18170704 (25 bp)
ATTGGAACAGCCTTGGACGTCTCCT
LOC_Os02g30540
OsAffx.24512.1.S1_at--325--5771Chr02:18170695..18170719 (25 bp)
GACGTCTCCTCGAACATGTTGGACA
LOC_Os02g30540
OsAffx.24512.1.S1_at--861--8911Chr02:18170739..18170763 (25 bp)
TGAGCTGGGATTGCTATGCTCCAGT
LOC_Os02g30540
OsAffx.24512.1.S1_at--1003--10131Chr02:18170753..18170777 (25 bp)
TATGCTCCAGTGACTTGCCTGAAAA
LOC_Os02g30540
OsAffx.24512.1.S1_at--414--851Chr02:18172436..18172460 (25 bp)
ATGGCATATACGTACATGGTGTTAT
LOC_Os02g30540
Target Sequence 
GTTTTAACTGCGAAAAGGCCTACAGATCCCATGTTTGATGGAGAGCTAAGCCTCAGGCAATGGGTTTTTGATGCATTTCC
GGCTCGGCTTGTTGATGTTGTTGACCACAAGCTGCTACAAGATGAGAAAACAAATGGGATCGGCGACATTGGAACAGCCT
TGGACGTCTCCTCGAACATGTTGGACAGATGCATTGTGTCAATAGTTGAGCTGGGATTGCTATGCTCCAGTGACTTGCCT
GAAAAAAGAGTATCAATTATTGAGGTGGTCAAGAAGTTGCACAAGGTATGTGGTATCCATAACCCTGACAGTGATGAAGA
ATTGTCAAAGGCTTGGGAGAAGTTAAGGTCTAGACAGTCAAAGATATCACGCATGATGCTCAGGCTAGAGAACAATGCTT
GGGACAAGTTAAGGTCTAGACAGTCAAAGATATCACGCAGGATGCTCAGGCTAGAGAACAATGCACTTGGAGGTGAAGGT
TTCCATATGGCATATACGTACATGGTGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis