Browse Element(s) Details


OsAffx.24650.2.S1_at

Description tigr:9630.m03812
TID=OsAffx.24650.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GDSL-like LipaseAcylhydrolase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3959011/11GDSL-like Lipase/Acylhydrolase family protein
LOC_Os08g436541/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39550Os.15749.1.S1_at11/112+23860580..23869000calcium-binding mitochondrial protein, putative, expressed
LOC_Os02g39550Os.15749.1.S2_at11/112+23860580..23869000calcium-binding mitochondrial protein, putative, expressed
LOC_Os02g39560Os.53306.1.S1_at11/112+23870626..23875833Protein kinase domain containing protein, expressed
LOC_Os02g39570Os.14567.1.S1_at11/112+23879738..23884873acetolactate synthase small subunit, putative, expressed
LOC_Os02g39580Os.46752.1.S1_at11/112+23885097..23887065expressed protein
LOC_Os02g39580Os.5575.1.S1_s_at11/112+23885097..23887065expressed protein
LOC_Os02g39590OsAffx.24650.2.S1_at11/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39590OsAffx.24650.1.S1_s_at11/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39590OsAffx.24650.1.S1_x_at2/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39600Os.19626.1.S1_at11/112+23888792..23892961outer envelope protein, putative, expressed
LOC_Os02g39610Os.51273.1.S1_at11/112+23894569..23895054expressed protein
LOC_Os02g39620OsAffx.2917.1.S1_s_at11/112+23898050..23899127stress-induced protein OZI1 precursor, putative, expressed
LOC_Os02g39620OsAffx.2917.1.S1_at10/112+23898050..23899127stress-induced protein OZI1 precursor, putative, expressed
LOC_Os02g39630Os.9122.1.S1_at11/112+23903531..23907772iron-stress related protein, putative, expressed
LOC_Os02g39640OsAffx.2918.1.S1_at10/112+23908574..23910341expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009835biological_processripening
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24650.2.S1_at--159--9411Chr02:23887951..23887975 (25 bp)
TCGGGCGCATGGTGACCGGCGTGGT
LOC_Os02g39590
OsAffx.24650.2.S1_at--987--7732Chr08:27460644..27460749 (25 bp)
GGTGGTGCTCGTCCCGGAGGTGGTG
LOC_Os08g43654
OsAffx.24650.2.S1_at--606--5891Chr02:23887688..23887712 (25 bp)
GAGCTGAGGCGGTCGTACCCGGAGG
LOC_Os02g39590
OsAffx.24650.2.S1_at--497--9931Chr02:23887673..23887697 (25 bp)
TACCCGGAGGCCACGGTCGCGTACG
LOC_Os02g39590
OsAffx.24650.2.S1_at--1068--2051Chr02:23887642..23887666 (25 bp)
ACTTCGGCGCGTACGTGCGGATGCT
LOC_Os02g39590
OsAffx.24650.2.S1_at--573--1931Chr02:23887591..23887615 (25 bp)
ACGGCACGGCGCTGACCAACGCGTG
LOC_Os02g39590
OsAffx.24650.2.S1_at--270--1951Chr02:23887586..23887610 (25 bp)
ACGGCGCTGACCAACGCGTGCTGCG
LOC_Os02g39590
OsAffx.24650.2.S1_at--923--9151Chr02:23887496..23887520 (25 bp)
TGCGCGAGGCCCGAGGAGCGGATCA
LOC_Os02g39590
OsAffx.24650.2.S1_at--201--9631Chr02:23887432..23887456 (25 bp)
TCATGGCCGAGCTTCTGTACCACAA
LOC_Os02g39590
OsAffx.24650.2.S1_at--1049--5911Chr02:23887424..23887448 (25 bp)
GAGCTTCTGTACCACAAGGGCTTCG
LOC_Os02g39590
OsAffx.24650.2.S1_at--221--10611Chr02:23887420..23887444 (25 bp)
TTCTGTACCACAAGGGCTTCGCGTC
LOC_Os02g39590
Target Sequence 
TCGGGCGCATGGTGACCGGCGTGGTGGAGTCGGTGGTGCTCGTCCCGGAGGTGGTGCGGTCCGTGGTGGGCGCGGCGAGG
GAGGTGCTCGAGATGGGCGCGACGCGGGTGGTGATCCCGGGCAACTTCCCGCTGGGTTGCGCGCCGAGCTACCTGGCGGC
GGTGGACGAGACGGAGCGCGCGGCGTACGACGGGAACGGGTGCCTCGTGGGTCTCAACCTGTTCGCGCAGATGCACAACG
TGCTGCTGCAGCAGGGGATCCGGGAGCTGAGGCGGTCGTACCCGGAGGCCACGGTCGCGTACGCCGACTACTTCGGCGCG
TACGTGCGGATGCTGGAGCGCGCGCGCGAGATGGGGTTCGACGGCACGGCGCTGACCAACGCGTGCTGCGGCGCGGGCGG
CGGCAAGTACAACTTCGAGATGGAGCGGATGTGCGGCGCGGGCGGGACGGCGGTGTGCGCGAGGCCCGAGGAGCGGATCA
GCTGGGATGGCGTCCACCTGACGCAGCGCGCGTACAGCGTCATGGCCGAGCTTCTGTACCACAAGGGCTTCGCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24650.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis