Browse Element(s) Details


OsAffx.24662.1.S1_x_at

Description tigr:9630.m03917
TID=OsAffx.24662.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4054010/11hypothetical protein
LOC_Os01g475003/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40500OsAffx.2928.1.S1_at11/112+24560450..24562239Glutaredoxin, putative, expressed
LOC_Os02g40510Os.26572.1.S1_at11/112+24563620..24566537Two-component response regulator-like PRR1, putative, expressed
LOC_Os02g40520NANA2+24572108..24572527hypothetical protein
LOC_Os02g40530Os.49829.1.S1_at11/112+24574588..24576658Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g40530Os.57514.1.S1_x_at1/112+24574588..24576658Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g40540OsAffx.24662.1.S1_at10/112+24586467..24587608hypothetical protein
LOC_Os02g40540OsAffx.24662.1.S1_x_at10/112+24586467..24587608hypothetical protein
LOC_Os02g40540OsAffx.9323.1.S1_at5/112+24586467..24587608hypothetical protein
LOC_Os02g40540OsAffx.18095.1.S1_x_at1/112+24586467..24587608hypothetical protein
LOC_Os02g40550Os.53063.1.S1_at11/112+24589318..24591097Lung seven transmembrane receptor family protein, expressed
LOC_Os02g40560OsAffx.24663.1.S1_at11/112+24591301..24592017hypothetical protein
LOC_Os02g40570OsAffx.22848.3.S1_x_at3/112+24593903..24599860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g40570OsAffx.22848.4.S1_at2/112+24593903..24599860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g40570OsAffx.22848.4.S1_x_at1/112+24593903..24599860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g40580NANA2+24605906..24612410retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24662.1.S1_x_at--847--3371Chr02:24587517..24587541 (25 bp)
CAGCGGTGGCGGAGTCTACGACCTC
LOC_Os02g40540
OsAffx.24662.1.S1_x_at--173--5851Chr02:24587471..24587495 (25 bp)
GACCATTGCCGGATCTGGAGCTAGG
LOC_Os02g40540
OsAffx.24662.1.S1_x_at--746--6211NONE
GAGGCGTGGCTCTGTCGGTGCAGCA
NONE
OsAffx.24662.1.S1_x_at--17--2971Chr02:24586999..24587023 (25 bp)
AATGTGGGCGACGATAGGTTGAGTC
LOC_Os02g40540
OsAffx.24662.1.S1_x_at--911--6651Chr02:24586982..24587006 (25 bp)
GTTGAGTCGAGGGTTGAATGCTTGT
LOC_Os02g40540
OsAffx.24662.1.S1_x_at--20--8695Chr10:1093827..1094279 (25 bp)
TGTGAGACGTCGTGGACTATCGTGT
NONE
OsAffx.24662.1.S1_x_at--1057--1893Chr01:27479595..27479619 (25 bp)
ACGTCGTGGACTATCGTGTGGCCGT
LOC_Os01g47500
OsAffx.24662.1.S1_x_at--407--8533Chr01:27479601..27479625 (25 bp)
TGGACTATCGTGTGGCCGTCGATGT
LOC_Os01g47500
OsAffx.24662.1.S1_x_at--803--7571Chr02:24586666..24586944 (25 bp)
GGGCTTGTGTGGCTTTCTTTCCTTG
LOC_Os02g40540
OsAffx.24662.1.S1_x_at--999--3611Chr02:24586663..24586941 (25 bp)
CTTGTGTGGCTTTCTTTCCTTGGCA
LOC_Os02g40540
OsAffx.24662.1.S1_x_at--801--7691Chr02:24586616..24586640 (25 bp)
GGGTCTGCTTCGTTCTATGATGGAC
LOC_Os02g40540
Target Sequence 
CAGCGGTGGCGGAGTCTACGACCTCGGGCATCACCGGATCCGCGTCGACCATTGCCGGATCTGGAGCTAGGTGCGGGAGG
GGAGGCGGGTGGCAGCGGGGATGCGGTGGCAGCGGGGATGCAGGCGGCAGCGGGAGCATAGGAGGCGTGGCTCTGTCGGT
GCAGCAGGGGAATGTGGGCGACGATAGGTTGAGTCGAGGGTTGAATGCTTGTGAGACGTCGTGGACTATCGTGTGGCCGT
CGATGTGGGGGGCTTGTGTGGCTTTCTTTCCTTGGCATTCGGCGAGGCCTAAGCCTCTTGGGTCTGCTTCGTTCTATGAT
GGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24662.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis