Browse Element(s) Details


OsAffx.24694.1.S1_x_at

Description tigr:9630.m04116
TID=OsAffx.24694.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4292011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42880Os.54449.1.S1_at11/112+25783370..25785344Remorin, C-terminal region family protein, expressed
LOC_Os02g42890OsAffx.24693.1.S1_at11/112+25791428..25794151Cytochrome b561 family protein, expressed
LOC_Os02g42890Os.51361.1.S1_at10/112+25791428..25794151Cytochrome b561 family protein, expressed
LOC_Os02g42900OsAffx.2945.1.S1_at11/112+25797244..25797987hypothetical protein
LOC_Os02g42910OsAffx.12465.1.S1_at11/112+25800084..25807541expressed protein
LOC_Os02g42920Os.55694.1.S1_at11/112+25810059..25814987expressed protein
LOC_Os02g42920OsAffx.24694.1.S1_x_at11/112+25810059..25814987expressed protein
LOC_Os02g42930OsAffx.2946.1.S1_at11/112+25817855..25818280hypothetical protein
LOC_Os02g42940Os.5388.1.S1_at10/112+25822495..25825767VAP27, putative, expressed
LOC_Os02g42950Os.54793.1.S1_at11/112+25833450..25836836yabby15 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24694.1.S1_x_at--846--6511Chr02:25813595..25813619 (25 bp)
GATTTGGCTAGTCAATGCACACACA
LOC_Os02g42920
OsAffx.24694.1.S1_x_at--836--10331Chr02:25813803..25813827 (25 bp)
TTTCAAGGGTGCTGATGCCCACTCA
LOC_Os02g42920
OsAffx.24694.1.S1_x_at--319--9171Chr02:25813818..25813842 (25 bp)
TGCCCACTCAGCATTATTGGCCAGT
LOC_Os02g42920
OsAffx.24694.1.S1_x_at--1064--7331Chr02:25813858..25813882 (25 bp)
GTGCAGCTCCATAAAGCACGCTGTT
LOC_Os02g42920
OsAffx.24694.1.S1_x_at--759--6551Chr02:25814569..25814593 (25 bp)
GATTACATGTTTCACCTGTTAACTG
LOC_Os02g42920
OsAffx.24694.1.S1_x_at--11--1191Chr02:25814594..25814618 (25 bp)
AGTATGCTAAGCTCCTACGGTTCAA
LOC_Os02g42920
OsAffx.24694.1.S1_x_at--40--5411Chr02:25814635..25814659 (25 bp)
GAAGCTATTGAGATCTGTCCAGAGT
LOC_Os02g42920
OsAffx.24694.1.S1_x_at--121--3891Chr02:25814649..25814673 (25 bp)
CTGTCCAGAGTTATTGGCATGCCAA
LOC_Os02g42920
OsAffx.24694.1.S1_x_at--928--8271Chr02:25814664..25814688 (25 bp)
GGCATGCCAAGCTATAGGCCGTGAA
LOC_Os02g42920
OsAffx.24694.1.S1_x_at--921--8111Chr02:25814703..25814727 (25 bp)
GGACTCTATGGTTAAGTCTGCCAAC
LOC_Os02g42920
OsAffx.24694.1.S1_x_at--276--9211Chr02:25814721..25814745 (25 bp)
TGCCAACGATGCAGGCCCATGTGAT
LOC_Os02g42920
Target Sequence 
GATTTGGCTAGTCAATGCACACACAGGTACAAGATCTACATTGAAGGATCAGCATGGTCAGTCAGTGAGAAGTACATTCT
AGCGTGTAATTCAATGACACTGGTTGTTACACCAAAATACTATGATTTCTTTTCAAGGGTGCTGATGCCCACTCAGCATT
ATTGGCCAGTTCGAGATGACAATAAGTGCAGCTCCATAAAGCACGCTGTTGACTGGGGCAATTCAAACAAGAAAAAGGCA
CAAAAAATAGGAAAGCAAGCAAGCAACTTCATTCAACAAGAGCTTAGTATGGACTATATATACGATTACATGTTTCACCT
GTTAACTGAGTATGCTAAGCTCCTACGGTTCAAGCCTACCAAACCACCTGAAGCTATTGAGATCTGTCCAGAGTTATTGG
CATGCCAAGCTATAGGCCGTGAAAGGAAGTTTATGGAGGACTCTATGGTTAAGTCTGCCAACGATGCAGGCCCATGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24694.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis