Browse Element(s) Details


OsAffx.24711.1.S1_at

Description tigr:9630.m04214
TID=OsAffx.24711.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4373011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43690OsAffx.24709.1.S1_at11/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed
LOC_Os02g43690OsAffx.24709.1.S1_x_at11/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed
LOC_Os02g43690Os.7869.1.S1_x_at5/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed
LOC_Os02g43700Os.1344.1.S1_at11/112+26373777..26375739Lipase family protein, expressed
LOC_Os02g43710OsAffx.24710.1.S1_at10/112+26376480..26379707enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os02g43720Os.49236.1.S1_at10/112+26380632..26383677enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os02g43730OsAffx.24711.1.S1_at11/112+26384935..26385175hypothetical protein
LOC_Os02g43740Os.54104.1.S1_at11/112+26387151..26390617Protein kinase G11A, putative, expressed
LOC_Os02g43740Os.46554.2.S1_x_at1/112+26387151..26390617Protein kinase G11A, putative, expressed
LOC_Os02g43740OsAffx.2666.1.S1_x_at1/112+26387151..26390617Protein kinase G11A, putative, expressed
LOC_Os02g43750Os.52763.1.S1_at11/112+26390632..26397394Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os02g43760OsAffx.2950.1.S1_s_at11/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g43760Os.1349.1.S1_at10/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g43760OsAffx.2950.1.S1_at10/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g43770OsAffx.24712.1.S1_at11/112+26403968..26406105bZIP protein, putative, expressed
LOC_Os02g43770OsAffx.24712.2.S1_x_at2/112+26403968..26406105bZIP protein, putative, expressed
LOC_Os02g43780OsAffx.12481.1.S1_at11/112+26407575..26409920hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24711.1.S1_at--1141--2691Chr02:26384965..26384989 (25 bp)
AAGCTCTTGGGTCTCTCAGCTGCTG
LOC_Os02g43730
OsAffx.24711.1.S1_at--423--9591Chr02:26384969..26384993 (25 bp)
TCTTGGGTCTCTCAGCTGCTGCAAC
LOC_Os02g43730
OsAffx.24711.1.S1_at--1095--7691Chr02:26384973..26384997 (25 bp)
GGGTCTCTCAGCTGCTGCAACTTTC
LOC_Os02g43730
OsAffx.24711.1.S1_at--714--2511Chr02:26384991..26385015 (25 bp)
AACTTTCCCCGATTCCAATGGCTAT
LOC_Os02g43730
OsAffx.24711.1.S1_at--1008--10651Chr02:26384995..26385019 (25 bp)
TTCCCCGATTCCAATGGCTATAGAT
LOC_Os02g43730
OsAffx.24711.1.S1_at--662--3191Chr02:26385006..26385030 (25 bp)
CAATGGCTATAGATCATGGCATGGC
LOC_Os02g43730
OsAffx.24711.1.S1_at--675--291Chr02:26385014..26385038 (25 bp)
ATAGATCATGGCATGGCCAGGGAGC
LOC_Os02g43730
OsAffx.24711.1.S1_at--911--1511Chr02:26385036..26385060 (25 bp)
AGCAGCAGCCAGAAACACACGCCAT
LOC_Os02g43730
OsAffx.24711.1.S1_at--195--1691Chr02:26385042..26385066 (25 bp)
AGCCAGAAACACACGCCATGTTCTT
LOC_Os02g43730
OsAffx.24711.1.S1_at--1043--3651Chr02:26385064..26385088 (25 bp)
CTTCATGTCAAGAACCTGTCAGGCA
LOC_Os02g43730
OsAffx.24711.1.S1_at--365--9611Chr02:26385066..26385090 (25 bp)
TCATGTCAAGAACCTGTCAGGCACA
LOC_Os02g43730
Target Sequence 
AAGCTCTTGGGTCTCTCAGCTGCTGCAACTTTCCCCGATTCCAATGGCTATAGATCATGGCATGGCCAGGGAGCAGCAGC
CAGAAACACACGCCATGTTCTTCATGTCAAGAACCTGTCAGGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis