Browse Element(s) Details


OsAffx.24750.1.S1_at

Description tigr:9630.m04497
TID=OsAffx.24750.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4629011/11pectinesterase inhibitor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46240OsAffx.22848.3.S1_x_at2/112+28192256..28196533retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46240OsAffx.22848.4.S1_x_at1/112+28192256..28196533retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46250NANA2+28197633..28198339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46260Os.10728.1.S1_at11/112+28206294..28211167Serine carboxypeptidase family protein, expressed
LOC_Os02g46270OsAffx.26278.2.S1_s_at11/112+28214708..28215684hypothetical protein
LOC_Os02g46270OsAffx.26278.1.S1_x_at11/112+28214708..28215684hypothetical protein
LOC_Os02g46270OsAffx.26278.2.S1_x_at3/112+28214708..28215684hypothetical protein
LOC_Os02g46280OsAffx.12518.1.S1_at11/112+28216551..28217000hypothetical protein
LOC_Os02g46290OsAffx.24750.1.S1_at11/112+28219067..28219765pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g46300NANA2+28221060..28221482hypothetical protein
LOC_Os02g46310OsAffx.24752.1.S1_at11/112+28224800..28226521Pectinesterase family protein
LOC_Os02g46320Os.50868.1.S1_at11/112+28227792..28231342ALG6, ALG8 glycosyltransferase family protein, expressed
LOC_Os02g46330OsAffx.12519.1.S1_at11/112+28234927..28235334hypothetical protein
LOC_Os02g46340OsAffx.12520.1.S1_s_at11/112+28240566..28241814Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24750.1.S1_at--838--371Chr02:28219186..28219210 (25 bp)
ATCAACGAGACATGCACCGCAACTT
LOC_Os02g46290
OsAffx.24750.1.S1_at--61--2511Chr02:28219206..28219230 (25 bp)
AACTTCCAACTATGGCTACTGCTTG
LOC_Os02g46290
OsAffx.24750.1.S1_at--833--1971Chr02:28219223..28219247 (25 bp)
ACTGCTTGGGCGTGCTCTCGGCTGA
LOC_Os02g46290
OsAffx.24750.1.S1_at--114--6351Chr02:28219308..28219332 (25 bp)
GATGCGCAACGTGACGTCCACGGTA
LOC_Os02g46290
OsAffx.24750.1.S1_at--717--9951Chr02:28219331..28219355 (25 bp)
TACGCGTCCTCACCGAGCTGGTAGA
LOC_Os02g46290
OsAffx.24750.1.S1_at--569--5911Chr02:28219357..28219381 (25 bp)
GAGCTCAAGCTCTGCATCAAGTACT
LOC_Os02g46290
OsAffx.24750.1.S1_at--191--6771Chr02:28219444..28219468 (25 bp)
GTTACCTCGTTCTACAAACTGCACC
LOC_Os02g46290
OsAffx.24750.1.S1_at--1002--5771Chr02:28219477..28219501 (25 bp)
GACGAGCCCGGCAACTGTGATATAA
LOC_Os02g46290
OsAffx.24750.1.S1_at--901--351Chr02:28219498..28219522 (25 bp)
ATAATGTTGTTTGAGGGAAGCGCCC
LOC_Os02g46290
OsAffx.24750.1.S1_at--276--8171Chr02:28219513..28219537 (25 bp)
GGAAGCGCCCACAAGAACCCGGTGA
LOC_Os02g46290
OsAffx.24750.1.S1_at--596--2611Chr02:28219528..28219552 (25 bp)
AACCCGGTGAGCTCGGAGAACATGT
LOC_Os02g46290
Target Sequence 
ATCAACGAGACATGCACCGCAACTTCCAACTATGGCTACTGCTTGGGCGTGCTCTCGGCTGATCCGGCAGGCGCCTCCGC
CACGGACAAGCGTGGCCTCGCCATCGCCGCGGCCAACATCACGATGCGCAACGTGACGTCCACGGTACGCGTCCTCACCG
AGCTGGTAGAGGAGCTCAAGCTCTGCATCAAGTACTACCAGGACATGGACGATCTCGTGGCCAGCGCCATCGACGACCTG
CGTGTCGGGCGCCCCGCCGTTACCTCGTTCTACAAACTGCACCGGGCCTCGGACGAGCCCGGCAACTGTGATATAATGTT
GTTTGAGGGAAGCGCCCACAAGAACCCGGTGAGCTCGGAGAACATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24750.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis