Browse Element(s) Details


OsAffx.24765.1.S1_at

Description tigr:9630.m04607
TID=OsAffx.24765.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4736011/11LAGLIDADG DNA endonuclease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47310Os.15731.1.S1_at11/112+28888196..28891679Tocopherol O-methyltransferase, chloroplast precursor, putative, expressed
LOC_Os02g47320Os.52590.1.S1_at11/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47320Os.4730.1.S1_at11/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47320OsAffx.24764.1.S1_at10/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47330NANA2+28895716..28896078expressed protein
LOC_Os02g47340OsAffx.29724.3.S1_x_at11/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.6.S1_x_at6/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.1.S1_x_at6/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.2.S1_x_at3/112+28897987..28903844hypothetical protein
LOC_Os02g47350Os.51095.1.A1_at9/112+28908875..28911021oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g47360OsAffx.24765.1.S1_at11/112+28911931..28914888LAGLIDADG DNA endonuclease family protein, expressed
LOC_Os02g47370Os.55550.1.S1_at10/112+28915307..28915923expressed protein
LOC_Os02g47380Os.17546.2.S1_x_at1/112+28917818..28921944retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47390Os.18947.1.S1_at11/112+28922837..28926136expressed protein
LOC_Os02g47390Os.54282.1.S1_x_at2/112+28922837..28926136expressed protein
LOC_Os02g47390Os.51925.1.S1_at1/112+28922837..28926136expressed protein
LOC_Os02g47400Os.52664.1.S1_at11/112+28929567..28933388pectinacetylesterase family protein, putative, expressed
LOC_Os02g47410Os.17381.1.S1_at11/112+28933917..28942098Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24765.1.S1_at--706--7791Chr02:28914303..28914327 (25 bp)
GGTCCATATTGTGCACTTTCAGTTC
LOC_Os02g47360
OsAffx.24765.1.S1_at--213--7711Chr02:28914359..28914383 (25 bp)
GGGTGCACATTCATGAGCGTTTCTT
LOC_Os02g47360
OsAffx.24765.1.S1_at--349--2971Chr02:28914386..28914410 (25 bp)
AATGGTTGTCTTCAGCAAGCAGATC
LOC_Os02g47360
OsAffx.24765.1.S1_at--851--1191Chr02:28914440..28914464 (25 bp)
AGTTTTCAACAATACCTCACCAGCA
LOC_Os02g47360
OsAffx.24765.1.S1_at--512--3752Chr02:28914455..28914479 (25 bp)
CTCACCAGCATTTCAGTTTCTTTGT
LOC_Os02g47360
OsAffx.24765.1.S1_at--882--6831Chr02:28914470..28914494 (25 bp)
GTTTCTTTGTTGACCAGTTCTTTCT
LOC_Os02g47360
OsAffx.24765.1.S1_at--301--3891Chr02:28914506..28914530 (25 bp)
CTGTGCTCCCAAAGCTTATCCATAG
LOC_Os02g47360
OsAffx.24765.1.S1_at--366--6771Chr02:28914534..28914558 (25 bp)
GTTAACTCCACGTGTTCTAGCATAT
LOC_Os02g47360
OsAffx.24765.1.S1_at--871--5951Chr02:28914639..28914663 (25 bp)
GAGAATTGTGAACTCCCTGCACACA
LOC_Os02g47360
OsAffx.24765.1.S1_at--779--5051Chr02:28914803..28914827 (25 bp)
GCAGCATAGGCTCTGATGGTACCCA
LOC_Os02g47360
OsAffx.24765.1.S1_at--711--1251Chr02:28914828..28914852 (25 bp)
AGATACCGACACTGATTCTGACGAT
LOC_Os02g47360
Target Sequence 
GGTCCATATTGTGCACTTTCAGTTCCAGGAAGATTCCAATGCTCATTCAGTTTTAAGGGTGCACATTCATGAGCGTTTCT
TTGAATGGTTGTCTTCAGCAAGCAGATCATTCGATGATGGGAGCAAGATACCCTATCAGTTTTCAACAATACCTCACCAG
CATTTCAGTTTCTTTGTTGACCAGTTCTTTCTGAAAGGTCAGCCTGTGCTCCCAAAGCTTATCCATAGGTGGTTAACTCC
ACGTGTTCTAGCATATTGGTTCATGTTTGGAGGCTCCAAACTCCCATCAGGTGATATTGTTCTTAAGCTCAGTGGTGGGA
ATAGCGAGGGTGTTGAGAGAATTGTGAACTCCCTGCACACACAGTCGTTAACAAGTAAAGTGAAGAGGAAGGGGAGATTC
TTTTGGATAGGTTTTCAGGGTAGCAATGCTGAATCTTTTTGGAGAATTATAGAGCCTCATGTTTTGAACAATTTTGCGAG
TTTAGTAACACAGGAAGGTAGCAGCATAGGCTCTGATGGTACCCAAGATACCGACACTGATTCTGACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24765.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis