Browse Element(s) Details


OsAffx.24767.1.S1_x_at

Description tigr:9630.m04628
TID=OsAffx.24767.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to DNA helicase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g475603/11DNA-binding protein SMUBP-2, putative, expressed
LOC_Os09g144001/11hypothetical protein
LOC_Os10g153101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47530NANA2+29033065..29033391hypothetical protein
LOC_Os02g47540OsAffx.22947.1.S1_x_at11/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.3.S1_x_at5/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.2.S1_x_at3/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.5.S1_x_at3/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47550NANA2+29046402..29046770hypothetical protein
LOC_Os02g47560Os.19539.1.S1_at9/112+29053525..29056601DNA-binding protein SMUBP-2, putative, expressed
LOC_Os02g47560OsAffx.24767.1.S1_x_at3/112+29053525..29056601DNA-binding protein SMUBP-2, putative, expressed
LOC_Os02g47570Os.18777.1.S1_at10/112+29063588..29066254PAP2 superfamily protein, expressed
LOC_Os02g47580Os.7396.2.S1_a_at11/112+29066585..29070609expressed protein
LOC_Os02g47590Os.16681.1.S1_at10/112+29072491..29075389Ornithine carbamoyltransferase, chloroplast precursor, putative, expressed
LOC_Os02g47600Os.8567.1.S1_at10/112+29075952..29080833Soluble inorganic pyrophosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0003677molecular_functionDNA binding
GO:0003724molecular_functionRNA helicase activity
GO:0004003molecular_functionATP-dependent DNA helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24767.1.S1_x_at--1057--6231Chr02:29054251..29054272 (22 bp)
GATGGTTCGATCAAACCCACTGGGA
LOC_Os02g47560
OsAffx.24767.1.S1_x_at--283--6851Chr02:29054219..29054243 (25 bp)
GTTTCCTTGGTGACAGCAGGCGCAT
LOC_Os02g47560
OsAffx.24767.1.S1_x_at--907--6211Chr02:29053595..29053619 (25 bp)
GGGCCTCCCTACATTGTAATTAGTT
LOC_Os02g47560
OsAffx.24767.1.S1_x_at--988--352Chr12:12444036..12444057 (22 bp)
ATAATCTGGAACGAGGAGGTTGCCG
NONE
OsAffx.24767.1.S1_x_at--152--10691Chr02:29050323..29050347 (25 bp)
TTGCCGGCGGCAATTTGAGAAAAGG
NONE
OsAffx.24767.1.S1_x_at--73--6433Chr12:12443961..12444372 (25 bp)
GATCTAGAGGCAAGCTCCACGACGA
NONE
OsAffx.24767.1.S1_x_at--583--471Chr02:29050184..29050208 (25 bp)
ATCTGCTCCGCATTGGCGAGCTATA
NONE
OsAffx.24767.1.S1_x_at--881--295Chr10:7788645..7788669 (25 bp)
ATACGGAGGAGCCAACGTCCTTCGT
LOC_Os10g15310
OsAffx.24767.1.S1_x_at--943--6591Chr02:29049456..29049480 (25 bp)
GATTGAGATCGTTGTTCTAATTGCT
NONE
OsAffx.24767.1.S1_x_at--266--4832Chr12:12443131..12443155 (25 bp)
GCTCATGTGCATATGGCATGTCCTT
NONE
OsAffx.24767.1.S1_x_at--672--771Chr02:29049417..29049441 (25 bp)
ATGTCCTTCACTAGTTCTGCAGGTG
NONE
Target Sequence 
GATGGTTCGATCAAACCCACTGGGAGCGGTAGGTTTCCTTGGTGACAGCAGGCGCATGAATGTGGCTATTACAAGGGCAT
GCCGGCATGTCACCGTGGGGCCTCCCTACATTGTAATTAGTTCAAATACTGTTGACAAGGATAAATACTGCCCACAAAGG
AAATGTATAATCTGGAACGAGGAGGTTGCCGGCGGCAATTTGAGAAAAGGCAGCACCGGGGAGAGGCCACCACGCCGCCT
GGATCTAGAGGCAAGCTCCACGACGACGGGTGCCTGCCTTTCTTCCGCCCATGGTCTCCACCGACTTCTCTTCCGCCGCC
GCCGATCTGCTCCGCATTGGCGAGCTATACGGAGGAGCCAACGTCCTTCGTCCTCGTCGGCGGCCGCCGTTCCGCCTTCG
TCCGTAGGCGGCCTCCAAATCGCCACCATCGCCCACACCTGCTGCCCTCGTCCGCCGCCTGTGGAGGACGCTGAGGAGAG
GATTGAGATCGTTGTTCTAATTGCTCATGTGCATATGGCATGTCCTTCACTAGTTCTGCAGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24767.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis