Browse Element(s) Details


OsAffx.24796.1.S1_at

Description tigr:9630.m04818
TID=OsAffx.24796.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4925011/11Myb-like DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49200OsAffx.3005.2.S1_at11/112+30072777..30074858hypothetical protein
LOC_Os02g49210OsAffx.3005.1.S1_at11/112+30075722..30079876hypothetical protein
LOC_Os02g49210OsAffx.3005.2.S1_at9/112+30075722..30079876hypothetical protein
LOC_Os02g49220OsAffx.12562.1.S1_at11/112+30081224..30081764hypothetical protein
LOC_Os02g49230Os.3400.1.S1_s_at11/112+30088431..30093298CCT motif family protein, expressed
LOC_Os02g49240Os.55140.1.S1_s_at10/112+30093303..30094311expressed protein
LOC_Os02g49250OsAffx.24796.1.S1_at11/112+30097917..30098762Myb-like DNA-binding domain containing protein
LOC_Os02g49260OsAffx.24797.1.S1_at11/112+30099918..30103822transporter, putative, expressed
LOC_Os02g49260Os.51219.1.S1_at1/112+30099918..30103822transporter, putative, expressed
LOC_Os02g49270Os.16852.1.S1_at1/112+30104433..30109228Proliferating-cell nucleolar antigen p120, putative, expressed
LOC_Os02g49280OsAffx.3007.1.S1_at11/112+30111406..30112504Protease inhibitor/seed storage/LTP family protein
LOC_Os02g49290Os.47463.1.S1_x_at6/112+30115817..30119496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49290Os.14491.2.S1_x_at4/112+30115817..30119496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49300NANA2+30122093..30125424transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24796.1.S1_at--837--2911Chr02:30098384..30098408 (25 bp)
AAGGAGAACCTCTTCCGGCAATGGT
LOC_Os02g49250
OsAffx.24796.1.S1_at--493--9331Chr02:30098353..30098377 (25 bp)
TCGCCAGGGAAATGCCTGGGCGCTC
LOC_Os02g49250
OsAffx.24796.1.S1_at--419--591Chr02:30098342..30098366 (25 bp)
ATGCCTGGGCGCTCCGGTGACTCGT
LOC_Os02g49250
OsAffx.24796.1.S1_at--776--8011Chr02:30098209..30098233 (25 bp)
GGAGGAAGATCAGCCGCTCGGTCTA
LOC_Os02g49250
OsAffx.24796.1.S1_at--722--5351Chr02:30098205..30098229 (25 bp)
GAAGATCAGCCGCTCGGTCTACGGC
LOC_Os02g49250
OsAffx.24796.1.S1_at--991--9451Chr02:30098174..30098198 (25 bp)
TCGGCCATCATGAGGGACCGCTGGA
LOC_Os02g49250
OsAffx.24796.1.S1_at--433--4331Chr02:30098170..30098194 (25 bp)
CCATCATGAGGGACCGCTGGATCCA
LOC_Os02g49250
OsAffx.24796.1.S1_at--766--5651Chr02:30098120..30098144 (25 bp)
GACGCCGCCAAGACGGCGGAAAACG
LOC_Os02g49250
OsAffx.24796.1.S1_at--314--5771Chr02:30097994..30098018 (25 bp)
GACGTTCTTGCCTCGAGCTTGGATT
LOC_Os02g49250
OsAffx.24796.1.S1_at--648--4031Chr02:30097992..30098016 (25 bp)
CGTTCTTGCCTCGAGCTTGGATTCT
LOC_Os02g49250
OsAffx.24796.1.S1_at--741--8571Chr02:30097975..30097999 (25 bp)
TGGATTCTTGCACCCTAGCATCCGA
LOC_Os02g49250
Target Sequence 
AAGGAGAACCTCTTCCGGCAATGGTGGAAGGTCGCCAGGGAAATGCCTGGGCGCTCCGGTGACTCGTGCCGCGCCAGGTG
GCGCCACCACCTCGCCCGCGACGTCTACCACCGCCCCTTCACCGCCCGCGACGACGAGGAGCTCGTGCGCCTCCACCGCC
ACACCGGCGGCAGCTGGAGGAAGATCAGCCGCTCGGTCTACGGCCGCACCTCGGCCATCATGAGGGACCGCTGGATCCAG
CTCCGCCGCAGCGGCTTGGTCCCCGACGCCGCCAAGACGGCGGAAAACGCCGGTTGCCCGCCGCCGGCCGCCGATGACTC
GGAGTACATGGGGAGCGAGGCAGAGTTGAAGTCGCCGCCGCCGCCGCCGCAGCAGCAGCACCCTCTCGCCGACGTTCTTG
CCTCGAGCTTGGATTCTTGCACCCTAGCATCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24796.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis