Browse Element(s) Details


OsAffx.24797.1.S1_at

Description tigr:9630.m04819
TID=OsAffx.24797.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4926011/11transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49210OsAffx.3005.1.S1_at11/112+30075722..30079876hypothetical protein
LOC_Os02g49210OsAffx.3005.2.S1_at9/112+30075722..30079876hypothetical protein
LOC_Os02g49220OsAffx.12562.1.S1_at11/112+30081224..30081764hypothetical protein
LOC_Os02g49230Os.3400.1.S1_s_at11/112+30088431..30093298CCT motif family protein, expressed
LOC_Os02g49240Os.55140.1.S1_s_at10/112+30093303..30094311expressed protein
LOC_Os02g49250OsAffx.24796.1.S1_at11/112+30097917..30098762Myb-like DNA-binding domain containing protein
LOC_Os02g49260OsAffx.24797.1.S1_at11/112+30099918..30103822transporter, putative, expressed
LOC_Os02g49260Os.51219.1.S1_at1/112+30099918..30103822transporter, putative, expressed
LOC_Os02g49270Os.16852.1.S1_at1/112+30104433..30109228Proliferating-cell nucleolar antigen p120, putative, expressed
LOC_Os02g49280OsAffx.3007.1.S1_at11/112+30111406..30112504Protease inhibitor/seed storage/LTP family protein
LOC_Os02g49290Os.47463.1.S1_x_at6/112+30115817..30119496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49290Os.14491.2.S1_x_at4/112+30115817..30119496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49300NANA2+30122093..30125424transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24797.1.S1_at--499--3691Chr02:30101494..30101518 (25 bp)
CTTTGGGTGCTGTAATGTCTCTCTC
LOC_Os02g49260
OsAffx.24797.1.S1_at--162--4831Chr02:30101387..30101657 (25 bp)
GCTAATAATTTTCCGCTGTTCAGTG
LOC_Os02g49260
OsAffx.24797.1.S1_at--246--4511Chr02:30102041..30102065 (25 bp)
GCCGTAGCCACTGTTACTGATCTAG
LOC_Os02g49260
OsAffx.24797.1.S1_at--86--1351Chr02:30102064..30102088 (25 bp)
AGAGTTCAATTTCTTCGGTGCTGTT
LOC_Os02g49260
OsAffx.24797.1.S1_at--1076--6951Chr02:30102089..30102113 (25 bp)
GTAGCATTGGCTTGGATTGTTCCTA
LOC_Os02g49260
OsAffx.24797.1.S1_at--427--6131Chr02:30102151..30102174 (24 bp)
GAGTGGAAATTGGACTGCCCTTGCC
LOC_Os02g49260
OsAffx.24797.1.S1_at--310--2511Chr02:30103564..30103588 (25 bp)
AACATCAGCTCTGTCACACGTTGTG
LOC_Os02g49260
OsAffx.24797.1.S1_at--77--1011Chr02:30103624..30103648 (25 bp)
AGGTTACCTGATCTTCAGCTCGGAT
LOC_Os02g49260
OsAffx.24797.1.S1_at--1137--5231Chr02:30103653..30103677 (25 bp)
GAATCACCAGCATCTGCGGAGCCAT
LOC_Os02g49260
OsAffx.24797.1.S1_at--1150--4011Chr02:30103699..30103723 (25 bp)
CGTCTACACCTATCTGGGTCTGAAA
LOC_Os02g49260
OsAffx.24797.1.S1_at--295--8191Chr02:30103740..30103764 (25 bp)
GGAAGAAACCGCCTTTAGCACAGAA
LOC_Os02g49260
Target Sequence 
CTTTGGGTGCTGTAATGTCTCTCTCCACTGGGCTTGCTAATAATTTTCCGCTGTTCAGTGTAGGTTTTTATCAAATGGCT
AAGATTGCTGTAACTCCAACAATTGTTGTGGCTGAATTTATGATTTTCCAGAAAAGGGTTTCCTCTCAAAAGGTTATCAC
ACTGGCAATTGTGTCATTTGGAGTGGCCGTAGCCACTGTTACTGATCTAGAGTTCAATTTCTTCGGTGCTGTTGTAGCAT
TGGCTTGGATTGTTCCTAGTGCAGTAAACAAAATTCTATGGTCAAATTTGCAACAGAGTGGAAATTGGACTGCCCTTGCC
GCAACATCAGCTCTGTCACACGTTGTGCTGGGGCAATTCAAGACCATAGTCATAATGCTCTCAGGTTACCTGATCTTCAG
CTCGGATCCTGGAATCACCAGCATCTGCGGAGCCATCGTCGCTCTCGGTGGCATGTCCGTCTACACCTATCTGGGTCTGA
AAGAGTCGACGACAACCGGGAAGAAACCGCCTTTAGCACAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis